Kassiopeia statistics

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Associated diseases

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Kassiopeia specifications

Information


Unique identifier OMICS_06095
Name Kassiopeia
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens

Publication for Kassiopeia

Kassiopeia in publications

 (3)
PMCID: 5740500
PMID: 29242366
DOI: 10.15252/msb.20177728

[…] a splice junction overhang size of 99 (–sjdboverhang) and gtf annotation files containing all transcripts and all mxe candidates. the mxe candidate gtf file was extracted from kassiopeia database and is available for download there (hatje & kollmar, ). the mapping was done for each sample separately. we allowed a rather stringent maximum mismatch of 2 […]

PMCID: 5535293
PMID: 28756777
DOI: 10.1186/s12915-017-0402-6

[…] genes. however, these problems were resolved in a comprehensive re-annotation using jamg (http://jamg.sourceforge.net) as per papanicolaou et al. []. briefly, the maker, protein domain evidence, kassiopeia [], genemark, rna-seq coverage, intron-spanning cdna reads and previously manually curated genes were provided as evidence with respectively increasing weight to the augustus de novo gene […]

PMCID: 3562229
PMID: 23383299
DOI: 10.1371/journal.pone.0054199

[…] were rather subtle and unrelated to the rediscovery of food after refilling the feeders. the adaptive value of these alternative behavioural tactics therefore needs to be further explored., we thank kassiopeia devriendt, jan de beck, and frans fierens for assistance with exploration tests and handling of birds, and natalie van houtte for molecular sexing of birds. this study complies with legal […]


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Kassiopeia institution(s)
Group Systems Biology of Motor Proteins, Abteilung NMR basierte Strukturbiologie, Max-Planck-Institut für Biophysikalische Chemie, Göttingen, Germany

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