KCH specifications

Information


Unique identifier OMICS_26340
Name KCH
Alternative name K-mer Counting on Hadoop
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input data A short sequence (i.e., few hundreds of characters each) or a single very large sequence of arbitrary length (e.g. millions or billions of characters).
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Requirements
MapReduce
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Umberto Ferraro Petrillo

Publication for K-mer Counting on Hadoop

KCH institution(s)
Dipartimento di Scienze Statistiche, Università di Roma - La Sapienza, Rome, Italy; Dipartimento di Informatica, Università di Salerno, Fisciano, Italy; Dipartimento di Matematica ed Informatica, Università di Palermo, Palermo, Italy
KCH funding source(s)
Supported by the Ministry of Research PRIN Project: 2010RTFWBH_003 “Data-Centric Genomic Computing (GenData 2020)” and the INdAM - GNCS Project 2017 “Algoritmi e tecniche efficienti per l’organizzazione, la gestione e l’analisi di Big Data in ambito biologico”.

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