KCMBT specifications

Information


Unique identifier OMICS_12115
Name KCMBT
Alternative name k-mer Counter based on Multiple Burst Trees
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of sequencing reads and k (the desired substring length).
Output data A list of unique k-mers in the input with their counts.
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Abdullah-Al Mamun <>

Publication for k-mer Counter based on Multiple Burst Trees

KCMBT institution(s)
Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA
KCMBT funding source(s)
Supported by the following grants: NIH R01-LM010101 and NSF 1447711.

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