KEC pipeline

KEC specifications

Information


Unique identifier OMICS_08902
Name KEC
Alternative name K-mer-based Error Correction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Roche
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained No

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Publication for K-mer-based Error Correction

KEC IN pipeline

2016
PMCID: 4866849
PMID: 27174273
DOI: 10.1128/genomeA.00358-16

[…] paired reads produced from a library with a fragment size of ca. 500 bp were pretreated using trimmomatic version 0.32 (8), and 600-mb subsamples were randomly extracted from them. after k-mer-based error correction using sga version 0.10.13 (9), de novo genome assembly was conducted using the a5-miseq pipeline (10). the assembled sequences were annotated using the rast server (11) […]

KEC institution(s)
Laboratory of Molecular Epidemiology and Bioinformatics, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA, USA

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