KegArray statistics

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KegArray specifications

Information


Unique identifier OMICS_17859
Name KegArray
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.2.4
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Kae Morishima <>

Additional information


http://www.kegg.jp/kegg/download/KegTools/KegArray/1_2_4/ReadMe.txt

KegArray in publications

 (12)
PMCID: 5003874
PMID: 27626034
DOI: 10.3389/fcvm.2016.00027

[…] factors such as the magnitude of each gene’s expression change, their type and position in the given pathways, and their interactions (). other pathway analysis methods and tools include kegg, kegarray, pathvisio, ingenuity, and others [for a detailed review, please refer to wheelock et al. ()]. these methods integrate different data types and pathway information and perform subsequent […]

PMCID: 5182994
PMID: 28028481
DOI: 10.7717/peerj.2819

[…] go terms with go p-values ≤ 0.05 and a multifunctionality of ≤0.85 were semantically summarized and visualized with revigo with an allowed similarity of 0.90, the most conservative setting ()., for kegarray analysis, the harbor seal transcriptome was translated to protein reads with transdecoder 2.0 (). the program kaas (kegg automatic annotation server) was used to annotate translated […]

PMCID: 4519337
PMID: 26221956
DOI: 10.1371/journal.pone.0134285

[…] analysis. when necessary, the web-based comparative go analysis was performed []. this analysis has been designed for bacterial genomes using a combined graphical and statistical comparison. the kegarray analysis was used for pathway mapping (version 1.2.3; []). such combined analyses were used to obtain a comprehensive understanding of the various biological processes that are different […]

PMCID: 4328429
PMID: 25887406
DOI: 10.1186/s12864-015-1283-0

[…] were selected to build pathway-act-networks according to the relationships identified between the pathways in the kegg database. pathway assignments were also performed using the kegg database and kegarray software []., the expression profiles of degs were determined by cluster analysis based on the stem method (http://www.cs.cmu.edu/~jernst/st/) [,]. significant profiles were identified using […]

PMCID: 4051754
PMID: 24914544
DOI: 10.1371/journal.pone.0099757

[…] for the present study (however, the results can be found in )., here we provide an integral view of the pathways combining the dia results () with the visual results of several pathways obtained via kegarray () plus dia results of gene ontology (go) biological process (files s2 and s4) and enrichment analysis performed using david ( and for details). in order to simplify the interpretation […]


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