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KEGG Annotation specifications

Information


Unique identifier OMICS_21135
Name KEGG Annotation
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Kae Morishima

KEGG Annotation citations

 (118)
call_split

Byssus Structure and Protein Composition in the Highly Invasive Fouling Mussel Limnoperna fortunei

2018
Front Physiol
PMCID: 5911496
PMID: 29713291
DOI: 10.3389/fphys.2018.00418
call_split See protocol

[…] n. A cutoff E-value ≤ 1.0e−5 was used to identify the most representative annotation. Clusters of Orthologous Groups for Eukaryotic Complete Genomes (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation were also performed using previously described methods (Hou et al., ; Li S. G. et al., ) with the cutoff E-value ≤ 1.0e−5. Typical unigenes with high homologies to the reported adhesi […]

call_split

Response analysis of host Spodoptera exigua larvae to infection by Heliothis virescens ascovirus 3h (HvAV 3h) via transcriptome

2018
Sci Rep
PMCID: 5876357
PMID: 29599494
DOI: 10.1038/s41598-018-23715-6
call_split See protocol

[…] ction in the R software, the intersection DEGs and union DEGs between different comparisons were both analyzed separately. The following enrichment analyses of DEGs were performed according to GO and KEGG annotation results with phyper function in the R software, the P values were calculated as described at https://en.wikipedia.org/wiki/Hypergeometric_distribution. […]

library_books

Transcriptome analysis of a taxol producing endophytic fungus Cladosporium cladosporioides MD2

2018
PMCID: 5859003
PMID: 29556854
DOI: 10.1186/s13568-018-0567-6

[…] cleotide databases, and the biological functions and metabolic pathways of these unigenes were further characterized through Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation. One potential and partial taxol biosynthesis pathway in C. cladosporioides MD2 was speculated, and dozens of unigenes were annotated to be involved in taxol biosynthesis. These resul […]

library_books

Revealing proteins associated with symbiotic germination of Gastrodia elata by proteomic analysis

2018
PMCID: 5840113
PMID: 29511914
DOI: 10.1186/s40529-018-0224-z

[…] ent control iTRAQ pairs. A 1.5-fold cutoff was used to determine up-accumulated or down-accumulated proteins, with a P value of < 0.05.Functional annotation of the proteins was performed using GO and KEGG annotation. Gene Ontology (GO) analyses were performed by WEGO (Web Gene Ontology Annotation Plot, http://wego.genomics.org.cn/) for plotting GO annotation results (Ye et al. ; Zeng et al. ). KEG […]

call_split

Comparison of Salmonella enterica Serovars Typhi and Typhimurium Reveals Typhoidal Serovar Specific Responses to Bile

2018
Infect Immun
PMCID: 5820949
PMID: 29229736
DOI: 10.1128/IAI.00490-17
call_split See protocol

[…] entially regulated genes was performed with Panther () using the S. Typhimurium GO annotation, while KEGG pathway analysis was performed with the GAGE R package (R 3.3.1) (), using the S. Typhi (stt) KEGG annotation. The VennDiagram () and gplots R packages were used for data visualization. […]

library_books

iTRAQ based quantitative proteomic analysis reveals important metabolic pathways for arsenic induced liver fibrosis in rats

2018
Sci Rep
PMCID: 5818499
PMID: 29459688
DOI: 10.1038/s41598-018-21580-x

[…] ne length bias was corrected. False discovery corrected p value < 0.05 was chosen to include as much as possible items. The KEGG ontology based annotation system (KOBAS) software were used to perform KEGG annotation and enrichment analysis (http://kobas.cbi.pku.edu.cn/home.do). The KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as th […]

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