KEGG BRITE statistics

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Protocols

KEGG BRITE specifications

Information


Unique identifier OMICS_02870
Name KEGG BRITE
Alternative name BRITE
Restrictions to use None
Maintained Yes

Publication for KEGG BRITE

KEGG BRITE citations

 (60)
call_split

Taxa function robustness in microbial communities

2018
Microbiome
PMCID: 5833107
PMID: 29499759
DOI: 10.1186/s40168-018-0425-4
call_split See protocol

[…] rRNA copy number and then infer KO abundance from the genomic content of each OTU. KO abundances were then normalized using inter-sample MUSiCC. Pathway-level functional summaries, as defined by the KEGG BRITE hierarchy [], were obtained by evenly distributing each KO’s average copy number across all pathways that contain that KO. Both KO and pathway tables were filtered to remove non-bacterial o […]

library_books

Analysis of Dark Current in BRITE Nanostellite CCD Sensors †

2018
PMCID: 5855356
PMID: 29415471
DOI: 10.3390/s18020479

[…] The BRight Target Explorer (BRITE) is a constellation of six nanosatelites launched in 2013–2014, which are dedicated to high-precise photometry of the brightest stars in blue (b) and red (r) filters. The mission is a collaborat […]

library_books

Molecular processes underlying synergistic linuron mineralization in a triple‐species bacterial consortium biofilm revealed by differential transcriptomics

2018
PMCID: 5911999
PMID: 29314727
DOI: 10.1002/mbo3.559

[…] expressed genes between consortium conditions and isolated conditions for both WDL1 and WDL7, the network‐based algorithm PheNetic (De Maeyer, Weytjens, Renkens, De Raedt, & Marchal, ) and the Search Brite tool for functional classification using KEGG orthology (Kanehisa, Goto, Sato, Furumichi, & Tanabe, ) were used. PheNetic searches for common pathways between differentially expressed genes base […]

library_books

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach

2017
Front Genet
PMCID: 5723288
PMID: 29259619
DOI: 10.3389/fgene.2017.00180

[…] tomatic Annotation Server) (Moriya et al., ), which selected all dicot and monocot plants, all algae, and budding yeast, for reference organisms. The assigned annotations were sorted according to the KEGG BRITE functional hierarchy or by KEGG modules.A phylogenetic evaluation of gene family was conducted by aligning the translated sequence with MUSCLE (Edgar, ) to obtain a distance matrix table. T […]

library_books

Cereal products derived from wheat, sorghum, rice and oats alter the infant gut microbiota in vitro

2017
Sci Rep
PMCID: 5662621
PMID: 29085002
DOI: 10.1038/s41598-017-14707-z

[…] w OTUs were normalised by the 16 S rRNA copy number and functional genes were inferred using KEGG Orthology genes. The inferred KEGG Orthology genes were grouped into functional pathways at the third BRITE hierarchy level using PICRUSt. A total of 5,516,828,518 (mean 20,432,698 ± 4,553,675) KEGG Orthology genes were predicted. Each of the 270 samples was rarefied at 15,198,942 KEGG Orthology genes […]

library_books

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

2017
MBio
PMCID: 5646248
PMID: 29042495
DOI: 10.1128/mBio.01343-17

[…] ies level, and the Voronoi treemaps were colored accordingly to species (). In order to assign the proteins to functional classes, all proteins were analyzed separately (microbial to COG and human to KEGG Brite [, ]). Pearson correlation coefficients were calculated based on RS amounts versus relative abundances of OTUs or proteins in the samples. For these calculations, values approximating the c […]


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KEGG BRITE institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan

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