KEGG Mapper specifications

Information


Unique identifier OMICS_06734
Name KEGG Mapper
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for KEGG Mapper

KEGG Mapper in publications

 (15)
PMCID: 5914196
PMID: 29719546
DOI: 10.3389/fpls.2018.00485

[…] and unique metabolites in a single treatment was performed using core functions of r., metabolomics pathways of each metabolite (supplementary table ) were searched against kegg pathway maps (kegg mapper, ) and p-values of each metabolomics pathways (supplementary table ) in mbrole 2.0 (). heat mapping was carried out using the manhattan distance method to group metabolites in different […]

PMCID: 5869700
PMID: 29588496
DOI: 10.1038/s41598-018-23667-x

[…] transcripts using blast against ko genes in kegg, downloaded 08.02.2017. transcripts with a blast score of 300 and above against ko genes in kegg were mapped to the kegg pathways as described in the kegg mapper tool. transcript abundances for three biological replicates for treatment and control at 6 and 24 hpe were estimated using rsem as part of the trinity pipeline (supplementary results […]

PMCID: 5263133
PMID: 28179897
DOI: 10.3389/fmicb.2017.00033

[…] as determined by benjamin and hochberg analysis, were considered differentially expressed between control and test conditions., gene expression changes in biosynthetic pathways were associated using kegg mapper-search and color (; ). the s. aureus transcriptome meta-database (satmd) () was used to compare sapienic acid de gene sets with existing s. aureus de gene sets., the tetro cdna synthesis […]

PMCID: 5302885
PMID: 28117666
DOI: 10.7554/eLife.20707.025

[…] analysis. kyoto encyclopedia of genes and genomes (kegg) pathways analysis (rrid:scr_012773) () was performed by mapping the kegg annotated degs from noiseqbio to kegg pathways as described in the kegg mapper tool. heat maps were generated from fold change data in r () and venn diagrams were created using the web-tool, venn (http://bioinformatics.psb.ugent.be/webtools/venn). individual genes […]

PMCID: 5158109
PMID: 27773914
DOI: 10.1264/jsme2.ME16061

[…] settings were used with a maximum e-value of 1e–5, minimum identity of 60%, and minimum alignment length of 15 amino acids. the subsystems database was used for functional annotation (), and the kegg mapper for identifying metabolic pathways (). data have been made publicly accessible through the link metagenomics.anl.gov/linkin.cgi?project=7746., dynamic models were derived by linear […]


To access a full list of publications, you will need to upgrade to our premium service.

KEGG Mapper institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan

KEGG Mapper reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review KEGG Mapper