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Protocols

KEGG PATHWAY specifications

Information


Unique identifier OMICS_21252
Name KEGG PATHWAY
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Kae Morishima

Publications for KEGG PATHWAY

KEGG PATHWAY citations

 (1961)
call_split

A Five microRNA Signature for Survival Prognosis in Pancreatic Adenocarcinoma based on TCGA Data

2018
Sci Rep
PMCID: 5955976
PMID: 29769534
DOI: 10.1038/s41598-018-22493-5
call_split See protocol

[…] ibution with a p-value < 0.05, and were performed with clusterProfiler package. In addition, to provide a readable graphic representation of the complex relationship between target genes and relative KEGG pathway, the “pathway-gene network” was constructed using Cytoscape. […]

library_books

First comprehensive analysis of lysine acetylation in Alvinocaris longirostris from the deep sea hydrothermal vents

2018
BMC Genomics
PMCID: 5946511
PMID: 29747590
DOI: 10.1186/s12864-018-4745-3

[…] and Genomes; http://www.genome.jp/kegg/) online service tools KAAS was utilized to predict the pathways in which the acetylated proteins were involved. Then the annotation results were mapped on the KEGG pathway database using KEGG mapper. These pathways were also enriched as performed in GO enrichment and further classified into hierarchical categories according to the KEGG website. Subcellular […]

library_books

Transcriptome and Co Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.

2018
Sci Rep
PMCID: 5945678
PMID: 29748645
DOI: 10.1038/s41598-018-25826-6

[…] nitrate response. Modules with correlation (r ≥ 0.4) and p-value (≤0.05) were extracted for further inquisition. Gene ontology (GO) for biological process and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway annotation of the significant modules were performed using the Database for Annotation, Visualization and Integrated Discovery (DAVID) v6.7 (https://david.ncifcrf.gov). Enrichment analys […]

call_split

Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

2018
BMC Plant Biol
PMCID: 5941469
PMID: 29739322
DOI: 10.1186/s12870-018-1296-3
call_split See protocol

[…] hazel. Based on the unigene expression results, DEGs were identified with EBseq [] by setting the threshold of fold change as ≥2.00 and posterior probability of equivalent expression (PPEE) as ≤0.05. KEGG pathway enrichment analysis of DGE data was carried by a BLAST search of the KEGG database (http://www.kegg.jp/kegg/). Q ≤ 0.05 was used as the threshold for significant enrichment of DEG KEGG pa […]

library_books

Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium

2018
Microbiome
PMCID: 5941691
PMID: 29739445
DOI: 10.1186/s40168-018-0465-9

[…] d out by BLASTX searching against both the UniProt and UniRef50 databases (UniProt Consortium, 2014). The best hit per transcript with e value < 10−4 was selected, and the description, Gene ontology, KEGG pathway and conserved domain(s) for each hit retrieved from the corresponding databases. A total of 44,287 proteins were predicted from the 35,492 contigs dataset by the TransDecoder programme [] […]

library_books

The aquatic animals’ transcriptome resource for comparative functional analysis

2018
BMC Genomics
PMCID: 5954267
PMID: 29764375
DOI: 10.1186/s12864-018-4463-x

[…] e data may apply the machine learning approach that could extract new features to develop gene prediction tools for aquatic animals. Finally, we develop a comparative analysis system by incorporating KEGG pathway analysis and gene expression profiles. This system assesses species and conditional diversity using the gene expression profile in specific biological pathways. dbATM not only improves de […]

Citations

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KEGG PATHWAY institution(s)
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan; Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo Japan; Life Science Solutions Department, Fujitsu Kyushu Systems Ltd., Fukuoka, Japan
KEGG PATHWAY funding source(s)
Supported by Japan Science and Technology Agency (KEGG project, partial); Bioinformatics Center, Institute for Chemical Research, Kyoto University (computational resource).

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