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KEGGanim specifications

Information


Unique identifier OMICS_16579
Name KEGGanim
Interface Web user interface
Restrictions to use None
Input data A dataset, a pathway.
Output data The animations and images of KEGG pathways.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jaak Vilo <>

Publication for KEGGanim

KEGGanim in publications

 (3)
PMCID: 4229883
PMID: 24886271
DOI: 10.1186/1471-2164-15-357

[…] the annotated lists of differentially expressed genes as an input to david and analyzed them against the background of all annotated genes of our reference library. for pathways of interest, kegganim [] was used to generate diagrams showing changes in expression level of individual genes. this approach allows to observe expression dynamics in the context of specific pathway […]

PMCID: 3126716
PMID: 21605425
DOI: 10.1186/1752-0509-5-82

[…] expression level fold changes are standardized over the standard deviation of fold changes for all genes. the standardized fold changes for individual genes in kegg pathways are visualized by using kegganim web tool [] in figure and additional file ,,,. we present an integrated network to show the connections between pathways and average expression perturbations for them in figure . […]

PMCID: 2945782
PMID: 20678241
DOI: 10.1186/gb-2010-11-8-r80

[…] ), which has previously been identified as a major regulator of preadipocyte differentiation in vitro and in vivo (for a review, see []). to examine the action of this individual pathway, we used kegganim, a recently developed web-based tool that allows the visualization of dynamic changes in genetic, signaling or metabolic pathways in time-related or treatment-related animations []. genes […]

KEGGanim institution(s)
Estonian Biocentre, Tartu, Estonia; University of Tartu, Institute of Computer Science, Tartu, Estonia; QureTec Inc. Ulikooli, Tartu, Estonia
KEGGanim funding source(s)
This research has been supported by the EU FP6 grants ENFIN LSHG-CT-2005-518254, FunGenES LSHG-CT-2003- 503494 and Estonian Science Foundation ETF5724.

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