KEGGconverter statistics

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Number of citations per year for the bioinformatics software tool KEGGconverter
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KEGGconverter specifications

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Unique identifier OMICS_06442
Name KEGGconverter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_06442
Name KEGGconverter
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Publication for KEGGconverter

KEGGconverter citations

 (2)
library_books

Precise generation of systems biology models from KEGG pathways

2013
BMC Syst Biol
PMCID: 3623889
PMID: 23433509
DOI: 10.1186/1752-0509-7-15

[…] on KEGG reactions. Generally, relations encoded in KEGG signaling maps seem to be completely ignored, which is incorrect, because BioPAX provides appropriate data structures to encode those relations.KEGGconverter [] is implemented in Java™ and able to translate KGML documents to SBML L2V1. The resulting species (enzymes and small molecules) do not contain any annotations, notes, or SBO terms and […]

library_books

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

2009
Mol Syst Biol
PMCID: 2724977
PMID: 19638971
DOI: 10.1038/msb.2009.47

[…] in KGML format are also available in GPML format ready for download (http://www.pathvisio.org/Download#Step_3) or can be converted into GPML (http://www.bigcat.unimaas.nl/tracprojects/pathvisio/wiki/KeggConverter).The exponential growth of biological data poses a challenge to the high-quality annotation and curation of databases. In this scenario, the use of wikis for community curation of biolog […]


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KEGGconverter institution(s)
Metabolic Engineering and Bioinformatics Group, Institute of Biological Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece

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