KEGGtranslator specifications

Information


Unique identifier OMICS_12329
Name KEGGtranslator
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Clemens Wrzodek <>

Information


Unique identifier OMICS_12329
Name KEGGtranslator
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Clemens Wrzodek <>

Publication for KEGGtranslator

KEGGtranslator in publications

 (6)
PMCID: 4993939
PMID: 27595107
DOI: 10.1155/2016/7863706

[…] tag eab7_2235 were described in the genome of e. antarcticum b7, except fabk gene, which was detected only by the automatic method., the kgml file produced by kegg was submitted to the software keggtranslator [] to be converted into a sbml (system biology markup language) file []. this file was converted into an excel spreadsheet using matlab functions. the files in sbml format […]

PMCID: 4259112
PMID: 25538939
DOI: 10.3389/fbioe.2014.00061

[…] vanted (junker et al., ) plug-in sbgn-ed (czauderna et al., ), the cytoscape (shannon et al., ) plug-in cysbgn (gonçalves et al., ), the online tool biographer (krause et al., ), the model generator keggtranslator (wrzodek et al., ), or the visual editor celldesigner (funahashi et al., )., for cellml, a specialized interactive framework has been developed for the display of models (wimalaratne […]

PMCID: 3846440
PMID: 24006914
DOI: 10.1186/1752-0509-7-88

[…] []. we use own parser to map the kegg pathways in kgml format to our data model []. there are two other major convertor tools such as keggconvertor [] (a java based tool to convert kgml to sbml) and keggtranslator [] (a java based tool to convert kgml to various formats such as biopax, sbml and gml). however, we have elected to implement our own parser to populate our own database schema, […]

PMCID: 3765910
PMID: 23953132
DOI: 10.1186/1471-2105-14-250

[…] the widely used kegg maps into sbgn, and they mostly compute entirely new layouts rather than utilizing layout information derived from the original (kegg, sbml, or biopax) map. tools such as keggtranslator [] and mgv [] can load and translate kegg maps but also do not support layout adjustment based on information from the original kegg map., some pathway database providers have begun […]

PMCID: 3623889
PMID: 23433509
DOI: 10.1186/1752-0509-7-15

[…] annotation of chemical formulas and molecular weight of small molecules, to an automated atom balance check of all reactions. all those strategies are now implemented in the second release of the keggtranslator application [] and described in detail in the following sections., several subsequent steps are involved in the creation of initial models from kegg pathways. all of these steps […]


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KEGGtranslator institution(s)
Center for Bioinformatics Tuebingen, University of Tuebingen, Tübingen, Germany
KEGGtranslator funding source(s)
The Federal Ministry of Education and Research (BMBF, Germany) funded this work in the projects Spher4Sys (grant number 0315384C) and NGFNplus (grant number 01GS08134).

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