KegHier specifications

Information


Unique identifier OMICS_17860
Name KegHier
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 0.1.1
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Maintainer


  • person_outline Kae Morishima

Additional information


http://www.kegg.jp/kegg/download/KegTools/KegHier/1_1_1/ReadMe.txt

KegHier citations

 (2)
library_books

De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light Mediated Functions in the Scallop Eye (Bivalvia: Pectinidae)

2013
PLoS One
PMCID: 3726758
PMID: 23922823
DOI: 10.1371/journal.pone.0069852

[…] Encyclopedia of Genes and Genomes (KEGG) pathway annotation using the KEGG Automatic Annotation Server (KAAS) (www.genome.jp/tools/kaas/). Results from the analysis were visualized using the program KegHier (available from http://www.kegg.jp/kegg/download/kegtools.html). Last, assembled transcriptome sequences were annotated with protein domains using the InterProScan program plugin for Geneious […]

library_books

The Complete Genome Sequence of Natrinema sp. J7 2, a Haloarchaeon Capable of Growth on Synthetic Media without Amino Acid Supplements

2012
PLoS One
PMCID: 3402447
PMID: 22911826
DOI: 10.1371/journal.pone.0041621

[…] he BBH (bi-directional best hit) method of KAAS (KEGG Automatic Annotation Server) to make KO (KEGG orthology) assignments, which were then used to map the CDS to metabolism pathways with KEGG tools KegHier . Because the KAAS analysis only uses a subset of genomes to make KEGG assignments, some functions for divergent organisms like haloarchaea may be more difficult to identify. For pathways in w […]

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