KegHier specifications


Unique identifier OMICS_17860
Name KegHier
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 0.1.1
Stability Stable
Maintained Yes




No version available


  • person_outline Kae Morishima

Additional information

KegHier citations


De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light Mediated Functions in the Scallop Eye (Bivalvia: Pectinidae)

PLoS One
PMCID: 3726758
PMID: 23922823
DOI: 10.1371/journal.pone.0069852

[…] Encyclopedia of Genes and Genomes (KEGG) pathway annotation using the KEGG Automatic Annotation Server (KAAS) ( Results from the analysis were visualized using the program KegHier (available from Last, assembled transcriptome sequences were annotated with protein domains using the InterProScan program plugin for Geneious […]


The Complete Genome Sequence of Natrinema sp. J7 2, a Haloarchaeon Capable of Growth on Synthetic Media without Amino Acid Supplements

PLoS One
PMCID: 3402447
PMID: 22911826
DOI: 10.1371/journal.pone.0041621

[…] he BBH (bi-directional best hit) method of KAAS (KEGG Automatic Annotation Server) to make KO (KEGG orthology) assignments, which were then used to map the CDS to metabolism pathways with KEGG tools KegHier . Because the KAAS analysis only uses a subset of genomes to make KEGG assignments, some functions for divergent organisms like haloarchaea may be more difficult to identify. For pathways in w […]

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