Kerfuffle statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Kerfuffle
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Tool usage distribution map

This map represents all the scientific publications referring to Kerfuffle per scientific context
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Kerfuffle specifications

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Unique identifier OMICS_22325
Name Kerfuffle
Interface Web user interface
Restrictions to use None
Input data A input genes in a textbox or a list of genes, each of which is separated by a break line.
Output data A summary tab which reports, for each species, the amount of genes found from the specified list, as well as invalid or missing gene names and a tab with a report of discovered clusters including a plot of the distribution of distances between consecutive gene pairs, a histogram of cluster sizes and a genomic visualization of the clusters.
Programming languages C++, Javascript, PHP
License GNU General Public License version 3.0
Computer skills Basic
Stability No
Maintained No

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Publication for Kerfuffle

Kerfuffle citation

library_books

Comparative analysis of human and mouse transcriptomes of Th17 cell priming

2016
Oncotarget
PMCID: 4924651
PMID: 26967054
DOI: 10.18632/oncotarget.7963

[…] Co-localization analysis was carried out separately for similarly regulated human and mouse genes using Kerfuffle gene co-localization analysis tool [] with parameters d <=3 and lowest p-value =1e-2. The p-value for each cluster was determined by randomly distributing the genes across the genome and by […]


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Kerfuffle institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
Kerfuffle funding source(s)
Supported by the Starr Fellowship and the CSHL Watson School of Biological Sciences NIH training grant [5T32GM065094], the Simons Foundation and the Starr Cancer Consortium [I3-A123].

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