Kerfuffle statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Kerfuffle

Tool usage distribution map

This map represents all the scientific publications referring to Kerfuffle per scientific context
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Kerfuffle specifications


Unique identifier OMICS_22325
Name Kerfuffle
Interface Web user interface
Restrictions to use None
Input data A input genes in a textbox or a list of genes, each of which is separated by a break line.
Output data A summary tab which reports, for each species, the amount of genes found from the specified list, as well as invalid or missing gene names and a tab with a report of discovered clusters including a plot of the distribution of distances between consecutive gene pairs, a histogram of cluster sizes and a genomic visualization of the clusters.
Programming languages C++, Javascript, PHP
License GNU General Public License version 3.0
Computer skills Basic
Stability No
Maintained No


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Publication for Kerfuffle

Kerfuffle citation


Comparative analysis of human and mouse transcriptomes of Th17 cell priming

PMCID: 4924651
PMID: 26967054
DOI: 10.18632/oncotarget.7963

[…] Co-localization analysis was carried out separately for similarly regulated human and mouse genes using Kerfuffle gene co-localization analysis tool [] with parameters d <=3 and lowest p-value =1e-2. The p-value for each cluster was determined by randomly distributing the genes across the genome and by […]

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Kerfuffle institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
Kerfuffle funding source(s)
Supported by the Starr Fellowship and the CSHL Watson School of Biological Sciences NIH training grant [5T32GM065094], the Simons Foundation and the Starr Cancer Consortium [I3-A123].

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