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Khmer specifications


Unique identifier OMICS_02560
Name Khmer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline Khmer team <>

Publications for Khmer

Khmer citations


“Because if we talk about health issues first, it is easier to talk about human trafficking”; findings from a mixed methods study on health needs and service provision among migrant and trafficked fishermen in the Mekong

PMCID: 5941587
PMID: 29739433
DOI: 10.1186/s12992-018-0361-x

[…] arguments that they are “undeserving” [, ], which usually leads to high rates of self-treatment or use of private clinics [, ]. among migrant fishermen in thailand, higher proportions of burmese and khmer fishermen self-treated compared to thai fishermen []., migrant fishermen in thailand can enrol in the health insurance card scheme (hics), administered the ministry of public health (moph). […]


High pregnancy incidence and low contraceptive use among a prospective cohort of female entertainment and sex workers in Phnom Penh, Cambodia

PMCID: 5934858
PMID: 29724181
DOI: 10.1186/s12884-018-1768-3

[…] south wales (unsw) in australia., the study design and recruitment procedures are described in detail elsewhere []. briefly, eligibility criteria included: being biologically female (aged 15–29), khmer language comprehension, working in a sex work or entertainment venue and having two or more sexual partners in the last month or engaging in transactional sex (defined as having exchanged sex […]


Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole Genome Sequencing

PMCID: 5915733
PMID: 29691339
DOI: 10.1128/mBio.00573-18

[…] reads were clipped and trimmed with alientrimmer v.0.4.0 (), corrected with musket v.1.1 (), merged (if needed) with flash v.1.2.11 (), and subjected to a digital normalization procedure with khmer v.2.0 (). for each sample, processed reads were finally assembled with spades v.3.10 ()., for each pair of assembled genomes, an evolutionary distance (proportion of aligned nucleotide […]


Health professional perceptions regarding screening tools for developmental surveillance for children in a multicultural part of Sydney, Australia

PMCID: 5879732
PMID: 29609547
DOI: 10.1186/s12875-018-0728-3

[…] 35% of the population reporting english as their second language (up to 70% in some suburban areas). other than english, the main languages spoken in the area include arabic, chinese, vietnamese, khmer, korean, greek, spanish, italian and serbian. unemployment rates are high in the area (5.2 to 22.3% as compared to the nsw average of 4.7%), and median individual incomes for over a third […]


Practical considerations for plant phylogenomics

PMCID: 5895195
PMID: 29732268
DOI: 10.1002/aps3.1038

[…] a guide for biologists learning to program, which provides a practical resource for those just getting started. the “simple fool's guide” (de wit et al., ) and the eel pond mrnaseq protocol ( are good examples to start with for data analysis, although updated protocols should be considered when available., with proper orthology […]


Prevalence of and factors associated with utilization of herbal medicines among outpatients in primary health centers in Cambodia

PMCID: 5879807
PMID: 29609580
DOI: 10.1186/s12906-018-2181-1

[…] population ranged from 26% to 52% []., cambodia offers a unique opportunity to examine the sociocultural, economic and medical reasons in patients who utilize tcam. between 1975 and 1979, the khmer rouge killed or detained physicians and closed the cambodia’s only medical school; by 1979, only 45 western-medicine-trained physicians remained in the country []. as a result, cambodia has one […]

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Khmer institution(s)
Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA; Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA; Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, USA
Khmer funding source(s)
Supported in part by the United States Department of Agriculture under grant 2009-03296 from the National Institute of Food and Agriculture, the National Science Foundation grant 09-23812, the National Institutes of Health grant 1R01HG007513-01 and NSF Postdoctoral Fellowship Award #0905961.

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