KIC statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left File compression chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

KIC specifications

Information


Unique identifier OMICS_11216
Name KIC
Alternative name K-mer Index Compressor
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data FASTQ file
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Yeting Zhang <>

Publication for K-mer Index Compressor

KIC in publication

PMCID: 5805770
PMID: 29422526
DOI: 10.1038/s41467-017-02480-6

[…] methods reduce the redundancy within a genomic sequence data set by either (i) assembling reads into long contigs, typically by a de bruijn graph-based approach (e.g., quip, leon, k-path, and kic), or by (ii) aligning the reads to a reference genome (e.g., lw-fqzip); the reads are then encoded as simple pointers to the reference or the assembled contigs., because both sequence mapping […]


To access a full list of publications, you will need to upgrade to our premium service.

KIC institution(s)
Department of Research, Synblex LLC, State College, PA, USA; New Jersey Center for Science Technology and Mathematics, Kean University, Union, NJ, USA
KIC funding source(s)
This study was partially supported by the Synblex LLC research fund, and partially by the NJCSTM, Kean University.

KIC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review KIC