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Kidney and Urinary Pathway Network Visualizer KUPNetViz

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A biological graph exploration tool allowing the exploration of Kidney & Urinary Pathway Knowledge Base (KUPKB) data through the visualization of biomolecule interactions. KUPNetViz provides renal biologists with an alternative network data representation, complementary to the functionality of the iKUP exploration tool with a small cost regarding the display complexity.

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KUPNetViz classification

KUPNetViz specifications

Interface:
Web user interface
Input data:
Accession numbers, UniProt accessions, Ensembl gene and protein IDs, miRBase accessions or simple free text
Programming languages:
PHP
Version:
1.0
Maintained:
Yes
Restrictions to use:
None
Output format:
SIF, GraphML, XGMML, Arena3D, PDF, PNG, SVG
Computer skills:
Basic
Stability:
Stable

KUPNetViz support

Documentation

Maintainer

  • Panagiotis Moulos <>

Credits

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Publications

Institution(s)

Institut National de la Santé et de la Recherche Médicale INSERM, U1048, Institute of Cardiovascular and Metabolic Disease, Toulouse, France; Université Toulouse III Paul-Sabatier, Toulouse, France; School of Computer Science, University of Manchester, Manchester, UK

Funding source(s)

This work is funded by the EU/FP7/ICT-2007.4.4 e-LICO project and by the FP7-IAPP program “Protoclin” (GA 251368).

Link to literature

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