KinFin specifications

Information


Unique identifier OMICS_19972
Name KinFin
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.3
Stability Stable
Requirements
Bash, wget, gunzip, pip
Source code URL https://codeload.github.com/DRL/kinfin/tar.gz/v1.0.3
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Dominik Laetsch

Publication for KinFin

KinFin citations

 (2)
library_books

Improving the annotation of the Heterorhabditis bacteriophora genome

2018
GigaScience
PMCID: 5906903
PMID: 29617768
DOI: 10.1093/gigascience/giy034

[…] vidual_gene_alignments: Alignments of orthogroups used to build the supermatrix. Directory of aligned sequences in fasta format.IPR.domain.analysis.txt: Comparative Interproscan statistics. Text file.kinfin.zip: KinFin analyses from the OrthoFinder analyses of Heterorhabditis bacteriophora predicted proteomes. Zipped archive (42.6 Mb).Low_coverage_scaffolds.txt: Scaffolds and contigs removed from […]

library_books

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

2017
PLoS Biol
PMCID: 5531438
PMID: 28749982
DOI: 10.1371/journal.pbio.2002266

[…] i and R. varieornatus using OrthoFinder 1.1.2 [] at different inflation values (). Proteins from all proteomes were functionally annotated using InterProScan []. OrthoFinder output was analyzed using KinFin [] under 2 competing phylogenetic hypotheses: either (1) “Panarthropoda,” where Tardigrada and Arthropoda share a more recent common ancestor distinct from Nematoda, or (2) Tardigrada and Nemat […]

KinFin institution(s)
Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK; The James Hutton Institute, Dundee, UK
KinFin funding source(s)
Supported by a James Hutton Institute/Edinburgh University School of Biological Sciences fellowship.

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