KinomeXplorer statistics

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KinomeXplorer specifications

Information


Unique identifier OMICS_05087
Name KinomeXplorer
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages C, Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_05087
Name KinomeXplorer
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages C, Python
Computer skills Basic
Stability Stable
Maintained Yes

Publication for KinomeXplorer

KinomeXplorer in publications

 (8)
PMCID: 5797227
PMID: 29396449
DOI: 10.1038/s41598-018-20231-5

[…] clusters, have at least one known upstream kinase (supplementary table ). the most prominent kinases in this analysis belong to ck1/2, pka and cdk kinase families., we used networkin 3.0 in kinomexplorer to further predict potential kinase-substrate relationships based on known kinase motifs and protein-protein interactions in the stringv10 database. we focused on the significant […]

PMCID: 5896498
PMID: 29666759
DOI: 10.7717/peerj.4599

[…] (ipa) (qiagen, redwood city, ca, usa), in particular by generating networks of protein–protein relationships. as background, the set of all proteins detected in the experiment was used., the kinomexplorer toolset (; ; ) was applied to predict likely kinases causing the observed phosphorylation changes. two programs were used, netphorest, the atlas of consensus phosphorylation site […]

PMCID: 5042004
PMID: 27034005
DOI: 10.18632/oncotarget.8427

[…] hr between cr2 and cr3, and the c-terminus (figure ). this suggests that these areas reside in less-ordered states allowing easy access for kinases and phosphatases. using bioinformatic tools like kinomexplorer, scansite or phosphonet, we list which kinases could be implicated in these phosphorylation events ()., by combining the information obtained from our ms experiments and sequencing […]

PMCID: 4644236
PMID: 26388441
DOI: 10.1016/j.cell.2015.08.056

[…] data, and members of the r.l. laboratory for critical reading of this manuscript, particularly c. santini. we are further indebted to j. kim for assistance with networkin, netphorest, and kinomexplorer and x. robin for assisting in developing and maintaining the rekinect website. we are also indebted to several members of the pawson laboratory, especially a. pasculescu […]

PMCID: 4644237
PMID: 26388442
DOI: 10.1016/j.cell.2015.08.057

[…] is currently funded by a ludwig fund postdoctoral fellowship. the algorithms and software developed in this work will be released under the creative commons licensing schemes at the websites http://kinomexplorer.science and http://kinspect.science. for further information, see also http://lindinglab.science., this is an open access article under the cc by license […]


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KinomeXplorer institution(s)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; Cellular Signal Integration Group (C-SIG), Center for Biological Sequence Analysis (CBS), Department of Systems Biology, Technical University of Denmark (DTU), Lyngby, Denmark; Cellular Signal Integration Group (C-SIG), Center for Biological Sequence Analysis (CBS), Department of Systems Biology, Technical University of Denmark (DTU), Lyngby, Denmark; Computational Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY, USA; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Molecular Health GmbH, Heidelberg, Germany,Department of Biology, University of Rome Tor Vergata, Rome, Italy; Department of Biology, University of Rome Tor Vergata, Rome, Italy; Istituto Ricovero e Cura a Carattere Scientifico, Fondazione Santa Lucia, Rome, Italy; Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; Cellular Signal Integration Group (C-SIG), Center for Biological Sequence Analysis (CBS), Department of Systems Biology, Technical University of Denmark (DTU), Lyngby, Denmark

KinomeXplorer reviews

 (2)
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lostisle

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Response to the review on 2015-12-24:

At first, I thought "kinomexplorer.info" was a "blank webpage" too but then my friend pointed out that I have to click on the text "NetworKIN" and "NetPhorest." I haven't actually used it yet, so my 5-star rating is only to balance out the previous review.
Anonymous user #965's avatar image No country

Anonymous user #965

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Yet another "resource/tool" from Linding group which is nothing more than a blank webpage that doesn't allow you to do anything at all.