KinomeXplorer statistics
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KinomeXplorer specifications
Information
Unique identifier | OMICS_05087 |
---|---|
Name | KinomeXplorer |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | Academic or non-commercial use |
Operating system | Unix/Linux |
Programming languages | C, Python |
Computer skills | Advanced |
Stability | Stable |
Maintained | Yes |
Versioning
No version available
Information
Unique identifier | OMICS_05087 |
---|---|
Name | KinomeXplorer |
Interface | Web user interface |
Restrictions to use | Academic or non-commercial use |
Programming languages | C, Python |
Computer skills | Basic |
Stability | Stable |
Maintained | Yes |
Publication for KinomeXplorer
KinomeXplorer citations
(5)Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis
[…] used to reveal the enriched annotations for biological function and cellular component. GO subgroups that were significantly enriched with p-values below 0.05 were reported.NetworKIN 3.0 (as part of KinomeXplorer) was used to generate kinase-substrate networks. Predictions scoring ≥5 were selected. Predicted kinase-substrate interaction networks were visualized using Cytoscape 3.4.0. Cellular com […]
Phosphoproteomic insights into processes influenced by the kinase like protein DIA1/C3orf58
[…] y Analysis (IPA) (Qiagen, Redwood City, CA, USA), in particular by generating networks of protein–protein relationships. As background, the set of all proteins detected in the experiment was used.The KinomeXplorer toolset (; ; ) was applied to predict likely kinases causing the observed phosphorylation changes. Two programs were used, NetPhorest, the atlas of consensus phosphorylation site sequenc […]
Phospho proteomic analyses of B Raf protein complexes reveal new regulatory principles
[…] he HR between CR2 and CR3, and the C-terminus (Figure ). This suggests that these areas reside in less-ordered states allowing easy access for kinases and phosphatases. Using bioinformatic tools like KinomeXplorer, Scansite or PhosphoNET, we list which kinases could be implicated in these phosphorylation events (). […]
Phosphoproteome dynamics of Saccharomyces cerevisiae under heat shock and cold stress
[…] ate the minimum centroid distance (minimum distance between two cluster centers produced by c-means clustering) (Schwammle & Jensen, ). Prediction of kinase–substrate relationships was achieved using KinomeXplorer with default thresholding criteria (Horn et al, ) (http://networkin.info/). Gene ontology enrichment analyses were performed against whole S. cerevisiae proteome as background using DAVI […]
A Grammar Inference Approach for Predicting Kinase Specific Phosphorylation Sites
[…] sifier for predicting protein phosphorylation sites [–, ]. Another method Musite is considered for large scale predictions of both non-kinase and kinase-specific phosphorylation sites []. RegPhos and KinomeXplorer are two latest tools, aimed to explore kinase signaling networks [, ]. Recently in 2014, Suo et al. have proposed a method PSEA for predicting kinase specific phosphorylation sites as we […]
Citations
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KinomeXplorer reviews
(2)

At first, I thought "kinomexplorer.info" was a "blank webpage" too but then my friend pointed out that I have to click on the text "NetworKIN" and "NetPhorest." I haven't actually used it yet, so my 5-star rating is only to balance out the previous review.

