KiPar statistics

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Citations per year

Number of citations per year for the bioinformatics software tool KiPar

Tool usage distribution map

This map represents all the scientific publications referring to KiPar per scientific context
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Associated diseases


Popular tool citations

chevron_left Quantitative kinetic modeling chevron_right
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KiPar specifications


Unique identifier OMICS_22162
Name KiPar
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A metabolic pathway, a subset of its reactions and a set of required kinetic parameters.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Database management system PostgreSQL
License Academic Free License version 3.0
Computer skills Advanced
Version 4
Stability Beta
Maintained Yes




No version available


  • person_outline Irena Spasic
  • person_outline Douglas Kell

Publication for KiPar

KiPar citations


Automated extraction and semantic analysis of mutation impacts from the biomedical literature

BMC Genomics
PMCID: 3395893
PMID: 22759648
DOI: 10.1186/1471-2164-13-S4-S10

[…] umbers and localization is presented in []. The proposed rule- and dictionary-based approach in this system is applied to PubMed abstracts and the results are provided in KID, the KInetic Database [].KiPar [], an information retrieval system, focuses on kinetic modeling of metabolic pathways using a rule-based approach.However, all the existing approaches are unable to extract the protein properti […]


KID an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes

BMC Bioinformatics
PMCID: 2912889
PMID: 20626859
DOI: 10.1186/1471-2105-11-375

[…] ing [-], i.e. the computer aided extraction of data from natural written text [,-]. Current algorithms include machine learning (e.g. Kinetikon []), statistic (e.g. FRENDA and AMENDA []), rule-based (KiPar [] and BioRAT []) and mixed approaches (SUISEKI []).Here we present a rule- and dictionary-based [,] text mining algorithm for the extraction of kinetic data, developed with a focus on a fast ca […]

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KiPar institution(s)
Manchester Centre for Integrative Systems Biology, The University of Manchester, Manchester, UK; School of Computer Science, The University of Manchester, Manchester, UK; School of Chemical Engineering and Analytical Science, The University of Manchester, Manchester, UK; School of Chemistry, The University of Manchester, Manchester, UK
KiPar funding source(s)
Supported by Biotechnology and Biological Sciences Research Council and Engineering and Physical Sciences Research Council.

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