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Kismeth

A web-based tool for bisulfite sequencing analysis. Kismeth was designed to be used with plants, since it considers potential cytosine methylation in any sequence context (CG, CHG, and CHH). It provides a tool for the design of bisulfite primers as well as several tools for the analysis of the bisulfite sequencing results. Kismeth is not limited to data from plants, as it can be used with data from any species. Kismeth simplifies bisulfite sequencing analysis. It is the only publicly available tool for the design of bisulfite primers for plants, and one of the few tools for the analysis of methylation patterns in plants.

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Kismeth classification

Kismeth specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
No
Restrictions to use:
None
Stability:
Stable

Kismeth support

Maintainer

This tool is not maintained anymore.

Credits

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Publications

Institution(s)

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; National Institute of Biological Sciences, Beijing, No, Zhongguancun Life Science Park, Beijing, China; Department of Genetics and Genomic Sciences, Mount Sinai School of Medicine, New York, NY, USA

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