KisSplice specifications


Unique identifier OMICS_01321
Name KisSplice
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A or some sets of reads, or a bi-directed de-Bruijn graph.
Input format FASTA,FASTQ,DOT
Operating system Unix/Linux, Mac OS
Programming languages C++, Python
License CeCILL version 2.1
Computer skills Advanced
Version 1.5.0
Stability Stable
Requirements CMake
Maintained Yes



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  • person_outline Pierre Peterlongo <>
  • person_outline Vincent Lacroix <>
  • person_outline Leandro Lima <>

Publications for KisSplice


SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence.

2016 Nucleic Acids Res
PMCID: 5100560
PMID: 27458203
DOI: 10.1093/nar/gkw655
KisSplice institution(s)
Inria Grenoble, Montbonnot, France; CNRS, UMR5558, Université Claude Bernard Lyon 1, Villeurbanne, France; IRISA Inria Rennes Bretagne Atlantique; GenScale Team, Université Rennes 1, Rennes, France
KisSplice funding source(s)
Supported by the Brazilian Ministry of Science, Technology and Innovation through the National Counsel of Technological and Scientific Development, under the Science Without Borders scholarship grant process number 203362/2014-4, the Agence Nationale de la Recherche ABS4NGS ANR project (ANR-11-BINF-0001-06) and Action n3.6 Plan Cancer 2009–2013, the Agence Nationale de la Recherche ANR-12-BS02-0008 (Colib’read), the European Research Council under the European Community’s Seventh Framework Programme (FP7 /2007–2013)/ERC Grant Agreement No. [247073]10.

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