Klusters protocols

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Klusters specifications

Information


Unique identifier OMICS_16700
Name Klusters
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 2.0.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Gyorgy Buzsaki <>

Publication for Klusters

Klusters in pipelines

 (6)
2015
PMCID: 4449271
PMID: 25849776
DOI: 10.1038/nature14273

[…] were detected and visually verified using the programs ndmanager and neuroscope. spike sorting involved an automated stage, performed using klustakwik, and a manual verification stage for which klusters or klustaviewa were used. detailed analysis of coupling to population rate and lfp was performed only for units with isolation distance > 20 (see refs. ,). units were selected and sorted […]

2015
PMCID: 4636356
PMID: 26544604
DOI: 10.1371/journal.pone.0142526

[…] neuronal activities were band-pass filtered (300 to 5000 hz). the raw data were first processed by neuroscope, ndmanager, klustakwik and then broken down into single unit signals by the use of klusters [, ] under manual control., we intended to classify the cn neurons in functional groups by their electrophysiological properties. it is known from rat and primate studies that spontaneous […]

2014
PMCID: 4164909
PMID: 25004203
DOI: 10.1016/j.jneumeth.2014.06.031

[…] input breakout panel. the digitized data were converted to spike2 format (version 5.13, ced). for all further analyses, data were converted to a raw binary format using tools of the freely available klusters, neuroscope, and ndmanager software suite (). eeg data were low-pass filtered with a windowed sinc filter at 100 hz and downsampled to 200 hz., spike sorting and data preprocessing […]

2014
PMCID: 4164909
PMID: 25004203
DOI: 10.1016/j.jneumeth.2014.06.031

[…] and ndmanager software suite (). eeg data were low-pass filtered with a windowed sinc filter at 100 hz and downsampled to 200 hz., spike sorting and data preprocessing were performed with the klusters, neuroscope, ndmanager and klustakwik software suites (). all other analyses were performed with routines based on the free toolboxes scipy 0.8 (), openelectrophy 0.2 (), running […]

2013
PMCID: 3555117
PMID: 23355821
DOI: 10.3389/fncom.2013.00001

[…] was used to track the position of the animal. localization of electrodes was histologically confirmed to be the ca3 pyramidal layer. spike sorting was performed by using the neuroscope—ndmanager—klusters software package (hazan et al., ). for stimulation of the model neuron, a 10 min period of these recordings was used., curve fitting (figures and ) was performed using matlab (v. […]


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Klusters in publications

 (46)
PMCID: 5899496
PMID: 29588415
DOI: 10.1073/pnas.1802356115

[…] been described using tetrodes (, ). for the awake data, the klustakwik algorithm (, ) was used. the spike-sorting procedure was finalized in both cases through visual inspection by using the program klusters ()., in anesthetized recordings, full-field visual stimulation of 640 × 480 resolution with 24-bit true color at 60 hz for each eye was presented by using a windows machine equipped […]

PMCID: 5882158
PMID: 29565979
DOI: 10.1371/journal.pcbi.1006041

[…] system. spike sorting was performed semi-automatically, using klustakwik (http://klustakwik.sourceforge.net/). this was followed by manual adjustment of the waveform clusters using the software klusters (http://neurosuite.sourceforge.net/)., in animals implanted over the antero-dorsal nucleus, the thalamic probe was lowered until the first thalamic units could be detected on at least 2-3 […]

PMCID: 5783937
PMID: 29367602
DOI: 10.1038/s41467-017-02765-w

[…] measuring for each potential unit the distance between spontaneous and laser evoked waveforms (as quantified by the inner product). single units were identified either manually using the software klusters (http://neurosuite.sourceforge.net) or automatically using the software klustakwik (http://klustakwik.sourceforge.net). only units with a clear refractory period in the auto-correlogram […]

PMCID: 5778086
PMID: 29358717
DOI: 10.1038/s41467-017-02764-x

[…] to extract the first three components of spike waveforms of each tetrode channel., spike waveforms from individual neurons were detected using the klustakwik automatic clustering software. using the klusters software, individual single units were isolated manually by verifying the waveform shape, waveform amplitude across tetrode’s channels, temporal autocorrelation (to assess the refractory […]

PMCID: 5700966
PMID: 29170377
DOI: 10.1038/s41467-017-01908-3

[…] system. spike sorting was performed semi-automatically, using klustakwik (http://klustakwik.sourceforge.net/). this was followed by manual adjustment of the waveform clusters using the software klusters., after 4–7 d of recovery, probes were lowered towards their target structures. in animals implanted over the adn, the thalamic probe was lowered until the first thalamic units could […]


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Klusters institution(s)
Center for Molecular and Behavioral Neuroscience, Rutgers, The State University of New Jersey, Newark, NJ, USA
Klusters funding source(s)
This work was supported by National Institutes of Health (NS34994, NS43157, MH54671) and the Human Frontier Science Foundation.

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