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kmer project specifications


Unique identifier OMICS_11037
Name kmer project
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data Graphics and distance matrices obtained during analysis
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Veronika Dubinkina

Publication for kmer project

kmer project citation


Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep Sea Sediments

PMCID: 5745018
PMID: 29187708
DOI: 10.1264/jsme2.ME17132

[…] The 11-nt k-mers were counted using the shortKmerCounter.jar program, and dissimilarities between metagenomic libraries were calculated using the custom R script of the “kmer project” software package (). Bray-Curtis dissimilarity matrices among the shotgun metagenomic libraries were calculated from the k-mer profiles using the vegan package in the R-environment (http […]

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kmer project institution(s)
Research Institute of Physico-Chemical Medicine, Moscow, Russia; Moscow Institute of Physics and Technology (State University), Dolgoprudny, Russia; ITMO University, St Petersburg, Russia
kmer project funding source(s)
Russian Scientific Foundation (project #15-14-00066); Ministry of Education and Science of the Russian Federation (RFMEFI57514X0075); the Government of Russian Federation, Grant 074-U01

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