KNIFE specifications


Unique identifier OMICS_09197
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Fastq or gzipped fastq files
Operating system Unix/Linux
Programming languages Perl, Python, R, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements Bowtie/Bowtie2, numpy, scipy, data.table, samtools
Maintained Yes


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  • person_outline Julia Salzman <>

Publication for KNIFE

KNIFE institution(s)
Stanford Department of Biochemistry and Stanford Cancer Institute, Stanford, CA, USA; UC San Diego Department of Reproductive Medicine, San Diego, CA, USA; Center for Cardiovascular Biology, Institute for Stem Cell and Regenerative; Medicine, Departments of Pathology, Bioengineering and Medicine/Cardiology, University of Washington, Seattle, WA, USA; UC San Diego Department of Pathology, San Diego, CA, USA

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