Knime4Bio statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Workflow management systems chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

Knime4Bio specifications


Unique identifier OMICS_01143
Name Knime4Bio
Software type Framework/Library
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes


Add your version


Publication for Knime4Bio

Knime4Bio in publications

PMCID: 4971529
PMID: 27485484
DOI: 10.1038/srep30967

[…] using bwa (version 0.6.2) and called using gatk (version 2.6) and samtools (version 0.1.19). on average, the mean depth was 503, and 96.4% of the targeted regions were covered at least 10 times. the knime4bio tool was used to manage and filter variants. synonymous variations that were not located at splice sites were excluded from further analysis. heterozygous and homozygous coding and splice […]

PMCID: 4937261
PMID: 27287695
DOI: 10.1161/JAHA.115.003122

[…] were considered as rare if the maf was <0.1% in the exome aggregation consortium (exac) non‐finnish european population (, version 0.3, 33 370 individuals). knime4bio, a set of custom nodes for the interpretation of next‐generation sequencing data with knime, was used for all merging and filtering steps. validation experiments and familial segregation […]

PMCID: 4466500
PMID: 26125026
DOI: 10.1155/2015/904541

[…] are now available. concerning ngs and big data, three extensions are proposed.knime extensions for next-generation sequencing [] is a set of free components and workflows dedicated to ngs analysis.knime4bio [] is a set of components for the filtering and manipulation of ngs vcf format files.knime big data extension [] is dedicated to high performance access and queries on big data. […]

To access a full list of publications, you will need to upgrade to our premium service.

Knime4Bio institution(s)
Institut du thorax, Inserm UMR 915, Centre Hospitalier Universitaire de Nantes, Nantes, France; The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
Knime4Bio funding source(s)
Inserm, the ‘Centre Hospitalier Universitaire’ of Nantes; the ‘Fédération Française de Cardiologie’ (FFC); ‘Fondation pour la Recherche Médicale’ (FRM); the Wellcome Trust (Grant n WT077008)

Knime4Bio reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Knime4Bio