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Knime4Bio | A set of custom nodes for the interpretation of NGS data with KNIME

A set of custom nodes for the KNIME (The Konstanz Information Miner) interactive graphical workbench, for the interpretation of large biological datasets. KNIME provides the ability to modify the nodes without having to re-run the whole analysis. We have chosen this latest tool to develop Knime4Bio, a set of new nodes mostly dedicated to the filtering and manipulation of VCF files.

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Knime4Bio forum

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Knime4Bio classification

Knime4Bio specifications

Unique identifier:
OMICS_01143
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Framework/Library
Restrictions to use:
None
License:
MIT License
Stability:
Stable

Knime4Bio distribution

versioning

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No versioning.

Knime4Bio support

Documentation

Credits

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Publications

Institution(s)

Institut du thorax, Inserm UMR 915, Centre Hospitalier Universitaire de Nantes, Nantes, France; The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK

Funding source(s)

Inserm, the ‘Centre Hospitalier Universitaire’ of Nantes; the ‘Fédération Française de Cardiologie’ (FFC); ‘Fondation pour la Recherche Médicale’ (FRM); the Wellcome Trust (Grant n WT077008)

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