Knime4NGS specifications

Information


Unique identifier OMICS_14848
Name Knime4NGS
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Medium
Version 1.7.0
Stability Stable
Requirements
limma, gplots, Biobase, edgeR, ggplot2, DESeq, perl, argparse, variant effect predictor, vep
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Robert Küffner

Publication for Knime4NGS

Knime4NGS citation

library_books

An architecture for genomics analysis in a clinical setting using Galaxy and Docker

2017
GigaScience
PMCID: 5691353
PMID: 29048555
DOI: 10.1093/gigascience/gix099

[…] Cluster Flow [] is a workflow manager using command lines. The tool requires programming skills and is not appropriate to the typical clinician end user. Knime4NGS [] is a graphical interface, but it is not yet available as a Docker image for rapid testing or deployment. NEAT [] seems to have a smaller developer community than Galaxy. The last update m […]

Knime4NGS institution(s)
Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany

Knime4NGS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Knime4NGS