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KO specifications

Information


Unique identifier OMICS_05360
Name KO
Alternative name KEGG Orthology
Restrictions to use None
Maintained Yes

Publication for KEGG Orthology

KO citations

 (388)
library_books

Transcriptomic analysis of crustacean molting gland (Y organ) regulation via the mTOR signaling pathway

2018
Sci Rep
PMCID: 5943448
PMID: 29743490
DOI: 10.1038/s41598-018-25368-x

[…] built-in KEGG pathways (http://www.genome.jp/kegg/pathway.html). KO_insect-specific.fasta was blasted against the KEGG annotations to the Kyoto Encyclopedia for Genes and Genomes (KEGG) pathways and KEGG orthology (KO) (http://www.genome.jp/kegg/ko.html) databases. The KEGG Automatic Annotation Server (KAAS) software (http://www.genome.jp/tools/kaas/) was used to obtain KO numbers to create a sum […]

library_books

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate

2018
Microbiome
PMCID: 5935910
PMID: 29729671
DOI: 10.1186/s40168-018-0468-6

[…] of hydrocarbons known as terpenes, the largest class of plant secondary metabolites []. We also looked for specific enrichment of the three main cellulolytic enzyme categories: β-1,4-endoglucanases (KEGG orthology K01179), β-1,4-exoglucanases (K01225), and β-glucosidases (K05350) []. β-1,4-endoglucanases were significantly enriched in sheep relative to primates (p < 0.001 for all comparisons, unp […]

library_books

Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non suppressive Soils for Rhizoctonia solani AG8

2018
Front Microbiol
PMCID: 5945926
PMID: 29780371
DOI: 10.3389/fmicb.2018.00859

[…] on average to the dominant pathways of Metabolism (32%), Unclassified KEGGs (31%), Genetic Information (22%), Environmental information Processing (6%), or other categories (9%). The number of unique KEGG orthology (KO) identifiers found for all 12 samples was 10,669.Differential expression analysis of KEGG functions revealed eight significant KEGG identifiers (P-value and FDR < 0.05, FC ≥ 2; Tabl […]

library_books

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?

2018
Front Microbiol
PMCID: 5915629
PMID: 29720967
DOI: 10.3389/fmicb.2018.00651

[…] with PICRUSt using BIOM tools. Then, the BIOM file was normalized with normalize_by_copy_number.py and metagenomes were predicted as well as NSTI scores calculated with predict_metagenomes.py, using KEGG Orthology as the base for predictions. Finally, an.spf file was prepared with biom_to_stamp.py. Predicted metagenomes were analyzed at the KEGG Orthologs (KO) level with STAMP v.2.1.3 (), using t […]

call_split

mus 52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability

2018
PLoS One
PMCID: 5905970
PMID: 29668735
DOI: 10.1371/journal.pone.0195871
call_split See protocol

[…] . GO term enrichment was performed using the BayGO algorithm []. To identify metabolic pathways in which genes could be modulated in response to phosphate availability, annotation was performed using Kegg Orthology [], using the Kegg Automatic Annotation Server (KAAS) and N. crassa as a reference organism. Expression graphics were constructed using GraphPad Prism v 5.1 Software (LaJolla, CA, USA). […]

call_split

The influence of diet and environment on the gut microbial community of field crickets

2018
Ecol Evol
PMCID: 5938447
PMID: 29760910
DOI: 10.1002/ece3.3977
call_split See protocol

[…] predict gene families of the bacterial communities in cricket guts, according to the online protocol (http://picrust.github.io/picrust/index.html), by referencing the sequenced 16S rRNA gene data to KEGG Orthology Database (Kanehisa & Goto, ). PICRUSt output was analyzed and visualized with STAMP version 2.1.3 (Parks, Tyson, Hugenholtz, & Beiko, ). Statistical significance was calculated using AN […]

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