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|Alternative name||KEGG Orthology|
|Restrictions to use||None|
Publication for KEGG Orthology
Transcriptomic analysis of crustacean molting gland (Y organ) regulation via the mTOR signaling pathway
[…] built-in KEGG pathways (http://www.genome.jp/kegg/pathway.html). KO_insect-specific.fasta was blasted against the KEGG annotations to the Kyoto Encyclopedia for Genes and Genomes (KEGG) pathways and KEGG orthology (KO) (http://www.genome.jp/kegg/ko.html) databases. The KEGG Automatic Annotation Server (KAAS) software (http://www.genome.jp/tools/kaas/) was used to obtain KO numbers to create a sum […]
Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
[…] of hydrocarbons known as terpenes, the largest class of plant secondary metabolites . We also looked for specific enrichment of the three main cellulolytic enzyme categories: β-1,4-endoglucanases (KEGG orthology K01179), β-1,4-exoglucanases (K01225), and β-glucosidases (K05350) . β-1,4-endoglucanases were significantly enriched in sheep relative to primates (p < 0.001 for all comparisons, unp […]
Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non suppressive Soils for Rhizoctonia solani AG8
[…] on average to the dominant pathways of Metabolism (32%), Unclassified KEGGs (31%), Genetic Information (22%), Environmental information Processing (6%), or other categories (9%). The number of unique KEGG orthology (KO) identifiers found for all 12 samples was 10,669.Differential expression analysis of KEGG functions revealed eight significant KEGG identifiers (P-value and FDR < 0.05, FC ≥ 2; Tabl […]
How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
[…] with PICRUSt using BIOM tools. Then, the BIOM file was normalized with normalize_by_copy_number.py and metagenomes were predicted as well as NSTI scores calculated with predict_metagenomes.py, using KEGG Orthology as the base for predictions. Finally, an.spf file was prepared with biom_to_stamp.py. Predicted metagenomes were analyzed at the KEGG Orthologs (KO) level with STAMP v.2.1.3 (), using t […]
mus 52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability
[…] . GO term enrichment was performed using the BayGO algorithm . To identify metabolic pathways in which genes could be modulated in response to phosphate availability, annotation was performed using Kegg Orthology , using the Kegg Automatic Annotation Server (KAAS) and N. crassa as a reference organism. Expression graphics were constructed using GraphPad Prism v 5.1 Software (LaJolla, CA, USA). […]
The influence of diet and environment on the gut microbial community of field crickets
[…] predict gene families of the bacterial communities in cricket guts, according to the online protocol (http://picrust.github.io/picrust/index.html), by referencing the sequenced 16S rRNA gene data to KEGG Orthology Database (Kanehisa & Goto, ). PICRUSt output was analyzed and visualized with STAMP version 2.1.3 (Parks, Tyson, Hugenholtz, & Beiko, ). Statistical significance was calculated using AN […]
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