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Protocols

KOMUGI specifications

Information


Unique identifier OMICS_22421
Name KOMUGI
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline PEC Team

Publication for KOMUGI

KOMUGI citations

 (12)
library_books

Mapping of quantitative trait loci for grain yield and its components in a US popular winter wheat TAM 111 using 90K SNPs

2017
PLoS One
PMCID: 5739412
PMID: 29267314
DOI: 10.1371/journal.pone.0189669

[…] and pleiotropic interactions underlying yield and yield components in wheat. Most of these QTL have been summarized and posted online on the catalogue of gene symbols. (https://shigen.nig.ac.jp/wheat/komugi/genes/symbolClassList.jsp). In the present study, we used high resolution genetic maps constructed using 90K array SNPs and implemented linear and linear mixed model QTL mapping approach in dif […]

library_books

Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.)

2017
Front Plant Sci
PMCID: 5694560
PMID: 29184557
DOI: 10.3389/fpls.2017.01843

[…] ntent, gluten subunits, gliadins, pigmentation, vernalization, glaucousness, tiller inhibition, brittle rachis, etc.) were projected on the consensus genetic map using common markers available in the Komugi gene list (McIntosh et al., ) and the constructed consensus genetic map.The 27 genetic maps with QTL/loci mapped were projected on the consensus genetic map by means of the homothetic function […]

call_split

Sequence differences in the seed dormancy gene Qsd1 among various wheat genomes

2017
BMC Genomics
PMCID: 5492916
PMID: 28662630
DOI: 10.1186/s12864-017-3880-6
call_split See protocol

[…] The full-length cDNA sequence (RFL_Contig4246, GenBank: AK333743.1) of CS was identified in the Wheat Genetic Resources Database (http://shigen.nig.ac.jp/wheat/komugi/ests/blast.jsp), representing an ortholog of Qsd1 from barley. A pair of primers was designated (Additional file : Table S1) based on the sequence of AK333743.1 using Primer3 (http://primer3.ut […]

library_books

Global gene expression profiling related to temperature sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii

2017
PLoS One
PMCID: 5413045
PMID: 28463975
DOI: 10.1371/journal.pone.0176497

[…] he normal temperature.BLASTx searches (E value < 1e-10) against the NCBI non-redundant protein database were conducted to predict the functions of probes and genes. The National BioResource Project’s KOMUGI website (http://www.shigen.nig.ac.jp/wheat/komugi/array/index.jsp) was also used to identify functions of the proteins partially encoded by the probes. Gene Ontology (GO) annotation was perform […]

library_books

A high resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B

2015
BMC Genomics
PMCID: 4534020
PMID: 26265254
DOI: 10.1186/s12864-015-1803-y

[…] A genome browser of the physical map of the wheat chromosome 6B is available from the Unité de Recherche Génomique Info website (https://urgi.versailles.inra.fr/gb2/gbrowse/wheat_phys_pub/) and the Komugi Genome Sequence Program web site (http://komugigsp.dna.affrc.go.jp/index.html). The other supporting data are included as additional files. […]

library_books

Accelerated Senescence and Enhanced Disease Resistance in Hybrid Chlorosis Lines Derived from Interspecific Crosses between Tetraploid Wheat and Aegilops tauschii

2015
PLoS One
PMCID: 4373817
PMID: 25806790
DOI: 10.1371/journal.pone.0121583

[…] pplementary files, GSM1441345-1441350.The functions of probes and genes were predicted by both BLAST and BLASTx searches (E value < 1e-10) against the DNA Data Bank of Japan (DDBJ) database. The NBRP KOMUGI website (http://www.shigen.nig.ac.jp/wheat/komugi/array/index.jsp) was also used for functional identification of the proteins encoded by the probes. The UniProtKB Protein Knowledgebase (http:/ […]

Citations

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KOMUGI institution(s)
Center for Genetic Resource Information, National Institute of Genetics, Mishima, Japan; Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan; Plant Germ-plasm Institute, Faculty of Agriculture, Kyoto University, Kyoto, Japan
KOMUGI funding source(s)
Supported in part by a Grant-in-Aid from the Ministry of Education, Science, Sport and Culture of Japan.

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