kpLogo specifications

Information


Unique identifier OMICS_15307
Name kpLogo
Alternative name k-mer probability logo
Interface Web user interface
Restrictions to use None
Input data DNA, RNA, protein and other arbitrary types of sequences in FASTA or Tabular format.
Input format FASTA
Output data The sequence logo plots (frequency, information content, probability, k-mer, fixed positions, stacking order), the tabular data file.
Programming languages C++, Shell (Bash)
Computer skills Basic
Stability Stable
Maintained Yes

Download


Documentation


Maintainer


  • person_outline Xuebing Wu <>

Information


Unique identifier OMICS_15307
Name kpLogo
Alternative name k-mer probability logo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data DNA, RNA, protein and other arbitrary types of sequences in FASTA or Tabular format.
Input format FASTA
Output data The sequence logo plots (frequency, information content, probability, k-mer, fixed positions, stacking order), the tabular data file.
Operating system Unix/Linux, Mac OS
Programming languages C++, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements GCC, ImageMagick, Ghostscript
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Xuebing Wu <>

Publication for k-mer probability logo

kpLogo institution(s)
Howard Hughes Medical Institute and Whitehead Institute for Biomedical Research, Cambridge, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA

kpLogo reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review kpLogo