Kraken specifications

Information


Unique identifier OMICS_04481
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Kraken article

Kraken citations

 (2)
2017
PMCID: 5618659

[…] ards came from m. abscessus and c. jeikeium either by mapping reads against reference genomes with usearch [20] or by retrospectively looking to the taxonomic read assignments performed by clark and kraken. , only two ards, erm(x) and erm(41), were classified to m. abscessus and c. jeikeium: 774 out of 778 reads mapping to erm(x) were classified to c. jeikeium, whereas all the 17 reads mapping […]

2016
PMCID: 4794121

[…] d percentage of good quality reads classified towards bacterial protein sequences in the ncbi non-redundant (nr) database., table 3 reports classification of viral sequences on nucleotide level (kraken) and protein level (diamond and hmm/vfam). viral families detected on both nucleotide and protein level included sequences belonging to eight different virus families infecting mammals: […]

Kraken review

star_border star_border star_border star_border star_border
star star star star star

maximinio

star_border star_border star_border star_border star_border
star star star star star
Desktop
Easy and very powerful tool even if outputs are highly polluted by false positive results.

Related Tools