Kraken specifications
Information
| Unique identifier | OMICS_04481 |
|---|---|
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | C++, Perl |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Kraken article
Kraken citations
(2)Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing
[…] ards came from m. abscessus and c. jeikeium either by mapping reads against reference genomes with usearch [20] or by retrospectively looking to the taxonomic read assignments performed by clark and kraken. , only two ards, erm(x) and erm(41), were classified to m. abscessus and c. jeikeium: 774 out of 778 reads mapping to erm(x) were classified to c. jeikeium, whereas all the 17 reads mapping […]
[…] d percentage of good quality reads classified towards bacterial protein sequences in the ncbi non-redundant (nr) database., table 3 reports classification of viral sequences on nucleotide level (kraken) and protein level (diamond and hmm/vfam). viral families detected on both nucleotide and protein level included sequences belonging to eight different virus families infecting mammals: […]
Kraken review
