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kruX specifications

Information


Unique identifier OMICS_04593
Name kruX
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB, Python, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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No version available

Documentation


Publication for kruX

kruX citation

library_books

Fine mapping analysis revealed complex pleiotropic effect and tissue specific regulatory mechanism of TNFSF15 in primary biliary cholangitis, Crohn’s disease and leprosy

2016
Sci Rep
PMCID: 4979016
PMID: 27507062
DOI: 10.1038/srep31429

[…] in each haplotype, we used quanto version 1.2.4., associations between snp genotypes and gene expression were evaluated using kruskal-wallis test on geometric mean intensity values implemented in r krux package., we first determined the critical region of the tnfsf15 locus that contained the snps and indels in high linkage disequilibrium (ld, r2≥0.8) with rs6478108 and rs4979462 using the ld […]


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kruX institution(s)
School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies (FRIAS), University of Freiburg, Freiburg, Germany

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