LAB-Secretome statistics

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Associated diseases

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LAB-Secretome specifications


Unique identifier OMICS_03906
Name LAB-Secretome
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for LAB-Secretome

LAB-Secretome in publications

PMCID: 5071367
PMID: 27687992
DOI: 10.1007/s00253-016-7813-0

[…] same order of magnitude as the experimentally identified surface proteome of l. lactis subsp. cremoris nz9000 (berlec et al. ). the choice of psortb v3 over other approaches or databases (such as lab-secretome (zhou et al. )) was dictated by the emphasis on precision (or specificity) instead of recall (or sensitivity). we strove to avoid programs that make predictions at all costs, often […]

PMCID: 4919995
PMID: 27341417
DOI: 10.1111/1751-7915.12371

[…] skin inhabitant, staphylococcus epidermidis., the latter organism is important to control and it has been shown to be a opportunistic pathogen upon wounding of the skin., , this database is stated to serve for comparative analysis of the predicted secretomes of lactic acid bacteria., […]

PMCID: 3836491
PMID: 24002751
DOI: 10.1099/mic.0.070755-0

[…] and tryptophan, sulfone of methionine, tryptophan oxidation to formylkynurenin of tryptophan and acetylation of the n terminus were specified in x! tandem as variable modifications. locatep and the lab-secretome database were used to predict the secretion pathways of identified proteins (, ). signalp 4.1 was used to predict the signal peptidase cleavage site of each protein (). grand average […]

PMCID: 3619620
PMID: 23579319
DOI: 10.3389/fmicb.2013.00073

[…] in 49 different prokaryotes (). years later, those lpxtg containing proteins found in prokaryotic lab were compiled and combined with other cell wall anchored and secreted structures to form the lab secretome database (). this database currently contains 26 lab and is publically available to aid in the identification of sdps as well as other secreted structures. although the software […]

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LAB-Secretome institution(s)
Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands

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