LALIGN specifications

Information


Unique identifier OMICS_15830
Name LALIGN
Interface Web user interface
Restrictions to use None
Input data A query sequence
Programming languages C
Computer skills Basic
Stability Stable
Maintained Yes

LALIGN citations

 (3)
2014
PMCID: 4160248

[…] cmb-ra against the deduced amino acid sequences of dipteran orthologs was performed using t-coffee (v6.85) [56], [57] using the following pair-wise alignment methods: the 10 best local alignments (lalign_pair), an accurate global alignment (slow_pair) [56], [57]. this alignment was used to construct a maximum likelihood tree using the phyml program (v3.0 alrt) [58] using the wag substitution […]

2013
PMCID: 3708823

[…] usa) by automatic sequencing at the servicio de genómica (parque científico de madrid, universidad autónoma de madrid). in order to deduce the α-tubulin mrna utrs from other leishmania species, lalign [37], and clustalw analyses [38] were carried out. gene comparison for investigating the constitution of α-tubulin variants was performed by blast/n analysis [20]. data from tritrypdb [39] […]

2011
PMCID: 3224142

[…] tree was constructed using the phylogeny platform http://www.phylogeny.fr/[54] and comprised the following steps. sequences were aligned using t-coffee (v6.85) using the 10 best local alignments (lalign_pair), an accurate global alignment (slow_pair). after alignment, ambiguous regions were removed with gblocks (v0.91b). minimum length of a block after gap cleaning was set at 10; no gap […]

LALIGN institution(s)
Department of Computer Science, Michigan Technological University, Houghton, MI, USA; Department of Computer Science, The Pennsylvania State University, University Park, PA, USA
LALIGN funding source(s)
This work was supported by Grant R01 LM05110 form the National Library of Medicine.

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