Lasergene Genomics Suite specifications

Information


Unique identifier OMICS_01125
Alternative name Lasergene’s DNA SeqMan software
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
High performance computing Yes
Free trial Yes
Maintained Yes

Subtools


  • SeqMan NGen
  • ArrayStar
  • GenVision Pro
  • Molecular Biology Suite

Versioning


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Documentation


Additional information


A basic version, Lasergene Genomics Essentials Software, is also available at http://www.dnastar.com/t-products-lasergene-genomics-essentials.aspx Tutorials http://www.dnastar.com/t-support-tutorials.aspx

Lasergene Genomics Suite citations

 (7)
2016
PMCID: 5096308

[…] was 66,058,464 bp for crab and 99,847,148 bp for lobster (see table 1). to ensure that the clc genomics assembly was of high quality, we performed a second round of de novo assembly using the seqman ngen assembler from the dnastar software suite (seqman ngen®. version 13.0. dnastar. madison, wi.). following assembly, quality of assembled contigs was investigated by comparison […]

2016
PMCID: 5089596

[…] not available for e. encina, we used a two‐step assembly procedure to assemble reads into homologous genetic regions. we first performed a de novo assembly for a subset of 30 million sequences with seqman ngen 3.0.4 (dnastar, dnastar software co., madison, wi, usa), using a minimum match percentage of 92%, a gap penalty of 50, and a match size of 50 bp (full details of assembly parameterization […]

2016
PMCID: 4742676

[…] was extracted using the wizard genomic dna purification kit (promega). the genome sequences were determined using an illumina hiseq 2000 platform (mr dna). de novo assembly was performed with seqman ngen (dnastar inc.). through blastn analysis (all versus all), contigs shorter than 1,000 bp, with higher than 99% identity to other sequences and already contained in a longer contig […]

2015
PMCID: 4650509

[…] (torrent suite software, thermo fisher scientific). reads were analyzed for differential expression among treatments by mapping reads from each treatment group to tcas3 (june 6, 2014), using arraystar (dnastar) and normalized by reads per kilobase of template per million mapped reads (rpkm [24]); additional data on the filtering of reads during the analysis is in additional file 9. […]

2014
PMCID: 4143406

[…] the nimblegen array id is: 090319_zea_kr_exptil. normalized using rma (robust multi-chip average). rma normalized expression values58 were log2 transformed and fold change was analyzed using dnastar arraystar® 4 software (http://www.dnastar.com/t-sub-products-genomics-arraystar.aspx). p values were calculated using the student t test, one-tail., maize gene annotations were obtained using ncbi […]

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