Lasergene Genomics Suite pipeline

Lasergene Genomics Suite specifications

Information


Unique identifier OMICS_01125
Name Lasergene Genomics Suite
Alternative name Lasergene’s DNA SeqMan software
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
High performance computing Yes
Free trial Yes
Maintained Yes

Subtools


  • ArrayStar
  • GenVision Pro
  • Molecular Biology Suite
  • SeqMan NGen

Versioning


Add your version

Documentation


Additional information


A basic version, Lasergene Genomics Essentials Software, is also available at http://www.dnastar.com/t-products-lasergene-genomics-essentials.aspx Tutorials http://www.dnastar.com/t-support-tutorials.aspx

Lasergene Genomics Suite IN pipelines

 (25)
2018
PMCID: 5875261
PMID: 29400646
DOI: 10.3201/eid2404.171919

[…] and sequenced them on the ion torrent personal genomics machine instrument using the ion pgm hi-q sequencing kit (life technologies). we generated full genome sequences using a templated assembly in seqman ngen (dnastar, madison, wi, usa) and using zika virus strain prvabc-59 (genbank accession no. kx377337) as a reference. we subjected consensus genomes generated by templated assemblies […]

2017
PMCID: 5383859
PMID: 28405402
DOI: 10.1098/rsos.170057

[…] containing sequences associated with illumina adaptors or pcr primers. after this step, fragments were 86–88 bases in length. a random subset of 25 million reads was assembled de novo using the seqman ngen software (dnastar inc.), specifying a minimum match percentage of 95 and a gap penalty of 30 (full details of parameter settings are available from the authors by request). contigs […]

2017
PMCID: 5435576
PMID: 28560165
DOI: 10.1016/j.gdata.2017.05.010

[…] (36.22 m reads) libraries were sequenced using the illumina hiseq2000 sequencing platform at mr dna molecular research laboratory, usa. fastqc tools were used for raw data assessment [13]. seqman ngen v12 (dnastar) was used for de novo genome assembly. a total of 67.81 mbs were assembled into 15,567 contigs (mean coverage, 133 ×). quast [14] was used to assess assembly quality (n50: […]

2017
PMCID: 5470697
PMID: 28614407
DOI: 10.1371/journal.pone.0179381

[…] 21 (http://www.mirbase.org/) and the gossypium hirsutum l. acc. tm-1 genome sequence [30] were used as references for known conserved mirna mapping and novel mirna identification, respectively. seqman ngen and arraystar (dnastar, inc.) were used for mapping of clean short reads (18–44 nt) to the reference and expression level analysis. the mirna expression was normalized by the reads per […]

2017
PMCID: 5470697
PMID: 28614407
DOI: 10.1371/journal.pone.0179381

[…] and the gossypium hirsutum l. acc. tm-1 genome sequence [30] were used as references for known conserved mirna mapping and novel mirna identification, respectively. seqman ngen and arraystar (dnastar, inc.) were used for mapping of clean short reads (18–44 nt) to the reference and expression level analysis. the mirna expression was normalized by the reads per kilobase per […]

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