LassoProt specifications

Information


Unique identifier OMICS_13376
Name LassoProt
Interface Application programming interface
Restrictions to use None
Input data Biopolymer structure
Input format PDB, XYZ, Gromacs XTC
Output data Structure visualization, lasso configurations visualization, trajectory analysis
Output format PDB, XYZ, SVG
Programming languages C++
Database management system SQLite
Computer skills Advanced
Stability Stable
Maintained Yes

Maintainer


  • person_outline Joanna I. Sulkowska

Publication for LassoProt

LassoProt citation

library_books

Complex lasso: new entangled motifs in proteins

2016
Sci Rep
PMCID: 5118788
PMID: 27874096
DOI: 10.1038/srep36895

[…] s described in this paper, a systematic review of the whole PDB has already been conducted and all identified proteins with lasso motifs (including those presented in this paper) are deposited in the LassoProt database. We are convinced that analysis of all those structures and their lasso motifs deserves further thorough studies. […]

LassoProt institution(s)
University of Warsaw, Faculty of Chemistry, Warsaw, Poland; Centre of New Technologies, University of Warsaw, Warsaw, Poland; University of Silesia, Institute of Mathematics, Katowice, Poland
LassoProt funding source(s)
National Science Centre [2012/07/E/NZ1/01900]; European Molecular Biology Organization [2057]; Foundation for Polish Science [130/UD/SKILLS/2015]; [120000-501/86-DSM-110200]

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