LSA specifications

Unique identifier:
OMICS_19019
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable
Maintained:
Yes
Name:
Latent Strain Analysis
Interface:
Command line interface
Input data:
A collection of multiple sequenced metagenomes.
Programming languages:
Python
Computer skills:
Advanced
Requirements:
NumPy, SciPy, Gensim, GNU Parallel, Pyro4

versioning

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LSA distribution

download

LSA support

Documentation

Maintainer

  • Eric Alm <>

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Credits

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Publications

Institution(s)

Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, USA; Broad Institute of Harvard and MIT, Cambridge, MA, USA; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA

Funding source(s)

Supported in part by the Rasmussen Family Foundation; by the National Human Genome Research Institute, grant number U54HG003067; the Center for Environmental Health Sciences at MIT; the Fijian Ministry of Health and by the Earth Institute at Columbia University

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