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LBtope specifications

Information


Unique identifier OMICS_06715
Name LBtope
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Unique identifier OMICS_06715
Name LBtope
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for LBtope

LBtope in publications

 (8)
PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] feature vectors capturing selected properties, such as those given by different propensity scales. relevant examples of b-cell epitope prediction methods based on ml include bepipred [], abcpred [], lbtope [], bcpreds [], and svmtrip []. datasets, training features, and algorithms used for developing these methods differ. bepipred is based on random forests trained on b-cell epitopes obtained […]

PMCID: 5915707
PMID: 29713601
DOI: 10.15171/bi.2018.06

[…] (genbank: amx81438) has been served with the prediction of be and te. in order to improve the accuracy of computational epitope mapping, we used different online predictor servers, including ellipro lbtope, bepipred v1.0, bcepred, abcpred, and immune epitope database (iedb) server (window size 7, threshold 1.0).- the bepipred can predict potential epitopes based on a combination of a hidden […]

PMCID: 5712781
PMID: 29225429
DOI: 10.6026/97320630013366

[…] selected allelic form, which was fully characterized and available in the genbank database., linear b-cell epitopes (20mer) for d7l and d7s were identified using three different programs: abcpred, lbtope, and bepipred 1.0 server. abcpred server [] was used to predict immunodominant, immunogenic linear b-cell epitopes from the d7l and d7s protein sequences. this program was developed based […]

PMCID: 5104390
PMID: 27832200
DOI: 10.1371/journal.pone.0166372

[…] hla class ii binders. this software allows prediction of promiscuous hla class ii binders that can bind to a large number of alleles., there are numerous methods such as bcepred [], cbtope [], lbtope [], discotope [], cobepro [] available for predicting b-cell epitopes. we employed a standalone version of lbtope software for the prediction of linear b-cell epitopes. in order to predict […]

PMCID: 5038878
PMID: 27703505
DOI: 10.3892/etm.2016.3636

[…] epitope prediction softwares available online: artificial neural network based b-cell epitope prediction (abcpred), b-cell epitope prediction (bepipred) and linear b-cell epitope prediction (lbtope). a total of 24 strains of euro-asiatic aiv-h7 that had been associated with a serious poultry pandemic or had infected humans in the past 30 years were selected to identify the conserved […]


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LBtope institution(s)
Bioinformatics Center, Institute of Microbial Technology, Chandigarh, India

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