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LccED specifications

Information


Unique identifier OMICS_21356
Name LccED
Alternative name The Laccase Engineering Database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 6.4
Maintained Yes

Maintainer


  • person_outline Jurgen Pleiss

Publication for The Laccase Engineering Database

LccED citations

 (4)
library_books

Highly Promiscuous Oxidases Discovered in the Bovine Rumen Microbiome

2018
Front Microbiol
PMCID: 5945886
PMID: 29780372
DOI: 10.3389/fmicb.2018.00861

[…] proteins (COGs) using RPS-BLAST analysis against the COG database (e-values ≤ 10-8). A comparison was performed using BLASTP analysis against the Laccase and multicopper oxidase engineering database (LccED) (e-value < 10-8, identity ≥ 20%, and query length coverage ≥ 20%) (). The protein signatures were detected using the InterProScan web service ().Contig taxonomic assignment was carried out usin […]

library_books

The Rhizoctonia solani AG1 IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)

2017
PLoS One
PMCID: 5423683
PMID: 28486484
DOI: 10.1371/journal.pone.0177278

[…] settings. In addition, these genes were screened for CAZymes by applying dbCAN []. For the identification of cytochrome p450 monooxygenase and multicopper oxidases, BioCatNet (biocatnet.de) CYPED and LccED databases provided by the University of Stuttgart (Stuttgart, Germany) were used. Finally, the Pathogen Host Interaction database (PHI-base) was used to find sequence homology in comparison with […]

library_books

Phylogenomic analyses reveal the diversity of laccase coding genes in Fonsecaea genomes

2017
PLoS One
PMCID: 5302831
PMID: 28187150
DOI: 10.1371/journal.pone.0171291

[…] []; a neighbor joining phylogenetic tree was determined using Clustal Omega (http://www.ebi.ac.uk/Tools/msa/clustalo/); 3) Putative laccases were extracted from the phylogenetic tree and compared to the Laccase Engineering Database [] (LccED, http://www.lcced.uni-stuttgart.de) using BlastP e-value cutoff 1e-10. Positive hits for putative laccases found in Fonsecaea species were subjected to downs […]

call_split

Identification and characterization of laccase type multicopper oxidases involved in dye decolorization by the fungus Leptosphaerulina sp.

2015
BMC Biotechnol
PMCID: 4535763
PMID: 26268358
DOI: 10.1186/s12896-015-0192-2
call_split See protocol

[…] r collision induced dissociation (CID) fragmentation. Mass spectra files were searched against Uniprot database (http://www.uniprot.org/) and The Laccase and multicopper oxidase Engineering Database (LccED, http://www.lcced.uni-stuttgart.de/cgi-bin/LccED1.2/index.pl) using SEQUEST through Proteome Discoverer (version 1.4.1.14). […]

Citations

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LccED institution(s)
Institute of Technical Biochemistry, University of Stuttgart, Stuttgart, Germany
LccED funding source(s)
Supported by the Deutsche Forschungsgemeinschaft (SFB 706).

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