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Citations per year

Number of citations per year for the bioinformatics software tool Lcore

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This map represents all the scientific publications referring to Lcore per scientific context
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Lcore specifications


Unique identifier OMICS_24844
Name Lcore
Alternative name LifeCore
Interface Web user interface
Restrictions to use None
Input data A set of macromolecule structures and an alignment of the structures.
Input format PDB
Output data A web page containing hyperlinks towards a file containing the input alignment, an output file in the PDB format with structures superimposed according to one of the cores, a script for RasMol or Jmol with definitions of atom sets, and a file with lists of residues for each core and each structure; a matrix of similarity between the structures; and a dendrogram of the structures composed at the base of the matrix of similarity.
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Sergey Spirin

Publication for Lcore

Lcore citations


Topological cell clustering in the ATLAS calorimeters and its performance in LHC Run 1

PMCID: 5586976
PMID: 28943797
DOI: 10.1140/epjc/s10052-017-5004-5

[…] or the two most energetic cells, and ri=0 for the rest. The calculation of the corresponding terms ⟨λ2⟩out and ⟨λ2⟩core for mlong2 follows the same respective rules, now with υcell,i=λi in Eq. () and λcore for the most energetic cells in ⟨λ2⟩core. The normalised moments mlong2 and mlat2 do not directly provide a measure of spatial topo-cluster dimensions, rather they measure the energy dispersion […]


PCF Based Sensor with High Sensitivity, High Birefringence and Low Confinement Losses for Liquid Analyte Sensing Applications

PMCID: 4721810
PMID: 26694408
DOI: 10.3390/s151229891

[…] ctively. The supplementary air holes are denoted by dc and ds and set to 0.2 µm and 0.4 µm, respectively. In our simulations, the hole to hole spacing in the core and in the cladding region is set to Λcore = 1 µm and Λcladding = 2.4 µm, respectively. Our proposed PCF structures contains 36 air holes in the cladding region and the index of refraction of the cladding holes are set to 1. Silica with […]


Gene Network Visualization and Quantitative Synteny Analysis of more than 300 Marine T4 Like Phage Scaffolds from the GOS Metagenome

Mol Biol Evol
PMCID: 2908710
PMID: 20231334
DOI: 10.1093/molbev/msq076

[…] d that the core genes generally found themselves in a phage-like context that was only rarely interrupted by eubacterial genes (Leubacteria = 8%). The Cyano-T4 genes were similar, with 47% Lself, 40% Lcore, and only 10% linkage to eubacterial genes. The eubacterial genes, however, had a very low degree of synteny amongst themselves (Lself = 17%)—compare the few crisscrossing lines inside the purpl […]

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Lcore institution(s)
Lomonosov Moscow State University, Faculty of Bioengineering and Bioinformatics, Moscow, Russia; Belozersky Institute of PhysicoChemical Biology, Lomonosov Moscow State University, Moscow, Russia; Institute of System Studies, Moscow, Russia; Gamaleya Center of Epidemiology and Microbiology, Moscow, Russia; Institute of Agricultural Biotechnology, Moscow, Russia
Lcore funding source(s)
Supported by the Russian Science Foundation (project No. 145000029) and by the Russian Foundation for Basic Research (project Nos. 1307 00969 and 140401693).

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