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Low complexity region prediction software tools | Protein sequence analysis

Local compositionally biased and low complexity regions (LCRs) in amino acid sequences have initially attracted the interest of researchers due to their implication in generating artifacts in sequence database searches. There is accumulating…
dAPE
Web

dAPE dAtabase of Polyx Evolution

Helps following the evolution of homorepeats based on orthology information,…

Helps following the evolution of homorepeats based on orthology information, using a sensitive but tunable cutoff to help in the identification of emerging homorepeats. dAPE is organized both as a…

fLPS
Desktop

fLPS

Assists users for the fast discovery of protein compositional biases(CB). fLPS…

Assists users for the fast discovery of protein compositional biases(CB). fLPS is an application that annotates both short highly-biased tracts and regions that have a compositional skew. It can…

LCR-eXXXplorer
Web

LCR-eXXXplorer

Offers tools for displaying low complexity regions (LCRs) from the…

Offers tools for displaying low complexity regions (LCRs) from the UniProt/SwissProt knowledgebase, in combination with other relevant protein features, predicted or experimentally verified.…

LPS-annotate
Web

LPS-annotate

A service for annotation of compositionally-biased regions, and searching for…

A service for annotation of compositionally-biased regions, and searching for similar regions in other sequences. The algorithm defines compositional bias through a thorough search for…

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