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Low complexity region prediction software tools | Protein sequence analysis

Local compositionally biased and low complexity regions (LCRs) in amino acid sequences have initially attracted the interest of researchers due to their implication in generating artifacts in sequence database searches. There is accumulating…
dAPE
Web

dAPE dAtabase of Polyx Evolution

Helps following the evolution of homorepeats based on orthology information,…

Helps following the evolution of homorepeats based on orthology information, using a sensitive but tunable cutoff to help in the identification of emerging homorepeats. dAPE is organized both as a…

HRaP
Dataset

HRaP HomoRepeats and Patterns

A database of occurrence of homorepeats and disordered patterns in different…

A database of occurrence of homorepeats and disordered patterns in different proteomes. HRaP is aimed at understanding the amino acid tandem repeat function in different proteomes. Therefore, the…

LCR-eXXXplorer
Web

LCR-eXXXplorer

Offers tools for displaying low complexity regions (LCRs) from the…

Offers tools for displaying low complexity regions (LCRs) from the UniProt/SwissProt knowledgebase, in combination with other relevant protein features, predicted or experimentally verified.…

LPS-annotate
Web

LPS-annotate

A service for annotation of compositionally-biased regions, and searching for…

A service for annotation of compositionally-biased regions, and searching for similar regions in other sequences. The algorithm defines compositional bias through a thorough search for…

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