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Information


Unique identifier OMICS_08190
Name LDA
Alternative name Lipid Data Analyzer
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.6.2
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Lipid Data Analyzer

LDA citations

 (21)
library_books

De novo fatty acid synthesis by Schwann cells is essential for peripheral nervous system myelination

2018
PMCID: 5881495
PMID: 29434029
DOI: 10.1083/jcb.201706010

[…] :1, 200 pmol; LM-1601, LPC 17:1, 80 pmol; LM-6002, sphingolipid mix, 120 pmol; LM-1500, PI 12:0/13:0, 320 pmol; LM-1502, PI 17:0/20:4, 320 pmol, LM-1504, PI 17:0/14:1, 320 pmol.Data were processed by Lipid Data Analyzer software as previously described (), relying on exact mass and retention time. Annotation of lipid species followed the shorthand nomenclature of the International Lipid Classifica […]

library_books

Homocysteine regulates fatty acid and lipid metabolism in yeast

2018
PMCID: 5900771
PMID: 29414770
DOI: 10.1074/jbc.M117.809236

[…] -enkephaline ([MH+]: m/z 556.2771 and [M−H−]: m/z 554.2615) was used as reference substance in the lock-spray. Data acquisition was done by MassLynx version 4.1 software (Waters). For lipid analysis, Lipid Data Analyzer version 1.6.2 software was used (). Data were normalized (analyte/ISTD) for recovery, extraction, and ionization efficacy using ISTDs. […]

library_books

Transcriptomic analyses reveal rhythmic and CLOCK driven pathways in human skeletal muscle

2018
eLife
PMCID: 5902165
PMID: 29658882
DOI: 10.7554/eLife.34114.037

[…] on a hybrid ion trap LTQ-Orbitrap XL mass spectrometer (Thermo Fisher Scientific) equipped with a micro LC binary pump UFLC-XR (Shimadzu, Kyoto, Japan). Lipid identification was carried out with the Lipid Data Analyzer II (LDA v. 2.5.1, IGB-TUG Graz University) (). […]

library_books

Proposal for a common nomenclature for fragment ions in mass spectra of lipids

2017
PLoS One
PMCID: 5697860
PMID: 29161304
DOI: 10.1371/journal.pone.0188394

[…] As a proof of concept we subsequently embedded our nomenclature rules in LDA (Lipid Data Analyzer) [], a software supporting automated high confidence lipid identification and quantification []. In addition to using multiple lipid fragment ions to support lipid identification a […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] ssion Analysis of Mass Spectrometry–Based Metabolomics Data; Komic Market: Kazusa Omics Data Market; kpath: Khaos Metabolic Pathways; LC: liquid chromatography; LDA: latent Dirichlet allocation; LDA: lipid data analyzer; LIMS: Laboratory Information Management System; LIMSA: Lipid Mass Spectrum Analysis; LOBSTAHS: Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences; m/z: mass […]

library_books

Characterisation of adipocyte derived extracellular vesicle subtypes identifies distinct protein and lipid signatures for large and small extracellular vesicles

2017
J Extracell Vesicles
PMCID: 5405565
PMID: 28473884
DOI: 10.1080/20013078.2017.1305677

[…] ear ion trap analyser and ejected at nominal mass resolution. Normalised collision energy was set to 35%, the repeat count was 2 and the exclusion duration was 1 min. Data were further analysed using Lipid Data Analyzer, a custom-developed software tool described in more detail by Hartler et al. []. […]

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LDA institution(s)
Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria

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