LeafCutter specifications

Unique identifier:
OMICS_11334
Interface:
Command line interface
Input format:
BAM
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
Apache License version 2.0
Version:
0.2.7
Requirements:
rstan, foreach, ggplot2, R.utils, gridExtra, reshape2, Hmisc

versioning

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LeafCutter distribution

download

LeafCutter support

Documentation

Maintainers

  • Yang Li <>
  • David Knowles <>

Additional information

https://github.com/davidaknowles/leafcutter/tree/master/docs

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Credits

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Publications

Institution(s)

Department of Genetics, Stanford University, Stanford, CA, USA; Department of Computer Science, Stanford University, Stanford, CA, USA; Department of Radiology, Stanford University, Stanford, CA, USA; UCL Genetics Institute, London, UK; Department of Neurodegenerative Disease, UCL Institute of Neurology, London, UK; Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA; Department of Biology, Stanford University, Stanford, CA, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA

Funding source(s)

Supported by a CEHG fellowship, the Howard Hughes Medical Institute, and the US National Institutes of Health (NIH grants HG007036, HG008140, and HG009431 and MH107666).

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