LeafCutter specifications

Information


Unique identifier OMICS_11334
Name LeafCutter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Advanced
Version 0.2.7
Stability Stable
Requirements rstan, foreach, ggplot2, R.utils, gridExtra, reshape2, Hmisc
Maintained Yes

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Versioning


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Documentation


Maintainers


  • person_outline Yang Li <>
  • person_outline David Knowles <>

Additional information


https://github.com/davidaknowles/leafcutter/tree/master/docs

Publication for LeafCutter

LeafCutter institution(s)
Department of Genetics, Stanford University, Stanford, CA, USA; Department of Computer Science, Stanford University, Stanford, CA, USA; Department of Radiology, Stanford University, Stanford, CA, USA; UCL Genetics Institute, London, UK; Department of Neurodegenerative Disease, UCL Institute of Neurology, London, UK; Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA; Department of Biology, Stanford University, Stanford, CA, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA
LeafCutter funding source(s)
Supported by a CEHG fellowship, the Howard Hughes Medical Institute, and the US National Institutes of Health (NIH grants HG007036, HG008140, and HG009431 and MH107666).

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