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LEAPdb specifications

Information


Unique identifier OMICS_21357
Name LEAPdb
Alternative name Late Embryogenesis Abundant Proteins database
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Allowed
Maintained Yes

Maintainers


  • person_outline Emmanuel JASPARD
  • person_outline Gilles HUNAULT

Additional information


http://forge.info.univ-angers.fr/~gh/Leadb/index.php?action=6

Publication for Late Embryogenesis Abundant Proteins database

LEAPdb citations

 (3)
library_books

Insights on Structure and Function of a Late Embryogenesis Abundant Protein from Amaranthus cruentus: An Intrinsically Disordered Protein Involved in Protection against Desiccation, Oxidant Conditions, and Osmotic Stress

2017
Front Plant Sci
PMCID: 5384071
PMID: 28439280
DOI: 10.3389/fpls.2017.00497

[…] ences, a search was performed using protein BLAST algorithm and multiple alignment was carried out with the sequences of the highest similarity matches (Figure ). A search of related sequences in the LEAPdb database () confirmed that all these sequences are grouped in the LEA_4 Pfam (PF02987). According to the classification proposed by , in this family are included LEA proteins from Group 3, such […]

library_books

Comparison of Amino Acids Physico Chemical Properties and Usage of Late Embryogenesis Abundant Proteins, Hydrophilins and WHy Domain

2014
PLoS One
PMCID: 4190154
PMID: 25296175
DOI: 10.1371/journal.pone.0109570

[…] Data about LEAPs contained in LEAPdb were used. LEAPs have been rigorously classified into 12 non-overlapping classes. Each class contains various number of sequences characterized by: (i) a unique amino acid motif; (ii) a homoge […]

library_books

Computational and Statistical Analyses of Amino Acid Usage and Physico Chemical Properties of the Twelve Late Embryogenesis Abundant Protein Classes

2012
PLoS One
PMCID: 3353982
PMID: 22615859
DOI: 10.1371/journal.pone.0036968

[…] structured proteins (FS - 158 sequences). The size of these datasets is comparable to that of the 12 LEAP classes, and they allow a more comprehensive comparison of LEAP classes structural properties.LEAPdb provides a large number of physico-chemical properties: number of amino acids (length), molecular weight, isoelectric point, FoldIndex , mean (reduced) net charge at pH 7, mean hydrophilicity , […]

Citations

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LEAPdb institution(s)
Université d’Angers, Laboratoire d’Hémodynamique, Interaction Fibrose et Invasivité tumorale hépatique, UPRES 3859, IFR 132, Université d’Angers, Angers, France; Université d’Angers, UMR 1191 Physiologie Moléculaire des Semences, IFR 149 QUASAV, Angers, France
LEAPdb funding source(s)
Supported by the Région des Pays-de-la Loire- France (program COSAVE).

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