leeHom pipeline

leeHom specifications

Information


Unique identifier OMICS_05254
Name leeHom
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.5
Stability Stable
Maintained Yes

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Publication for leeHom

leeHom IN pipeline

2015
PMCID: 4505326
PMID: 26183383
DOI: 10.1038/srep12072

[…] run for r. multicaudata and 96 bp paired-end run for trypanobia sp., both on an illumina hi-seq 2000. base calling was performed with freeibis47, adaptor and primer sequences were removed using leehom48, and reads with low complexity and false paired indices were discarded. raw data of all libraries were trimmed by removing all reads that included more than 5 bases with a quality score […]

leeHom institution(s)
Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
leeHom funding source(s)
Supported by the Max Planck Society and NSERC for PGS Doctoral scholarship.

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