leeHom pipeline
leeHom specifications
Information
| Unique identifier | OMICS_05254 |
|---|---|
| Name | leeHom |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Biological technology | Illumina |
| Operating system | Unix/Linux |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Version | 1.1.5 |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Documentation
Maintainers
- person_outline Gabriel Renaud <>
- person_outline Janet Kelso <>
Publication for leeHom
2014 Nucleic Acids Res
PMCID: 4191382
PMID: 25100869
DOI: 10.1093/nar/gku699
leeHom IN pipeline
2015
PMCID: 4505326
PMID: 26183383
DOI: 10.1038/srep12072
[…] run for r. multicaudata and 96 bp paired-end run for trypanobia sp., both on an illumina hi-seq 2000. base calling was performed with freeibis47, adaptor and primer sequences were removed using leehom48, and reads with low complexity and false paired indices were discarded. raw data of all libraries were trimmed by removing all reads that included more than 5 bases with a quality score […]
leeHom institution(s)
Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
leeHom funding source(s)
Supported by the Max Planck Society and NSERC for PGS Doctoral scholarship.
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