Lemon-Tree statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Lemon-Tree
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Multi-omic data integration chevron_right
Want to access the full stats & trends on this tool?

Protocols

Lemon-Tree specifications

Information


Unique identifier OMICS_19213
Name Lemon-Tree
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes
Wikipedia https://github.com/eb00/lemon-tree/wiki

Download


download.png

Versioning


No version available

Maintainers


  • person_outline Eric Bonnet
  • person_outline Tom Michoel

Publication for Lemon-Tree

Lemon-Tree citations

 (30)
library_books

Inferring the Minimal Genome of Mesoplasma florum by Comparative Genomics and Transposon Mutagenesis

2018
mSystems
PMCID: 5893858
PMID: 29657968
DOI: 10.1128/mSystems.00198-17

[…] n M. mycoides JCVI-syn3.0, highlighting the difficulty of identifying and understanding the roles of essential genes, even in the simplest cells.Mesoplasma florum is a bacterium first isolated from a lemon tree flower in 1984 (). Unlike many other members of the class Mollicutes, M. florum shows a short doubling time of <40 min, requires no sterol for growth, and has no known pathogenic potential. […]

library_books

Gene co expression networks in liver and muscle transcriptome reveal sex specific gene expression in lambs fed with a mix of essential oils

2018
BMC Genomics
PMCID: 5885410
PMID: 29618337
DOI: 10.1186/s12864-018-4632-y

[…] The ConsM_K module, identified in liver, was further analysed with the Lemon-Tree algorithm to investigate potential regulator genes. In the males we found two regulatory genes involved in immune and inflammation pathways: catenin alpha like 1 (CTNNAL1) and nuclear trans […]

library_books

Sodium Hypochlorite Irrigation and Its Effect on Bond Strength to Dentin

2017
Biomed Res Int
PMCID: 5585644
PMID: 28904947
DOI: 10.1155/2017/1930360

[…] Proanthocyanidin has been found in high concentration in grape seed extract, pin bark extract, cocoa beans, lemon tree bark, and hazel nut tree leaves []. It has been observed that the antioxidant ability of proanthocyanidin is 20 times higher than that reported for sodium ascorbate; its absorbtion can be q […]

library_books

Draft Genome Sequence of Cronobacter sakazakii GP1999, Sequence Type 145, an Epiphytic Isolate Obtained from the Tomato’s Rhizoplane/Rhizosphere Continuum

2017
Genome Announc
PMCID: 5543640
PMID: 28774978
DOI: 10.1128/genomeA.00723-17

[…] environmental sources like soil, household dust, and powdered infant formula production lines, as well as from fruits, vegetables, herbs, cereals, and grains (), and they have also been isolated from lemon tree, wheat, rice, and soybean plant rhizoplane/rhizosphere continuums ().Several lines of evidence suggest environmental origins for Cronobacter spp., with plants as the ancestral econiche prom […]

library_books

Distribution and community composition of lichens on mature mangroves (Avicennia marina subsp. australasica (Walp.) J.Everett) in New Zealand

2017
PLoS One
PMCID: 5493409
PMID: 28666019
DOI: 10.1371/journal.pone.0180525

[…] s habitat []. Some terrestrial invertebrates have been recorded from mangroves in New Zealand. This includes several moth species, including Planotortrix avicenniae, a mite (Acalitus avicenniae), the lemon tree borer (Oemona hirta) and several ant species []. Despite several international studies describing epiphytic plant and/or lichen diversity on mangroves [, –], there is very little published […]

library_books

More Is Better: Recent Progress in Multi Omics Data Integration Methods

2017
Front Genet
PMCID: 5472696
PMID: 28670325
DOI: 10.3389/fgene.2017.00084

[…] It is another unsupervised method focused on reconstructing module networks (Bonnet et al., ). After finding co-expressed clusters from the expression data matrix, Lemon-Tree helps to identify consensus modules and upstream regulatory programs through ensemble methods. First, a gene expression matrix is employed to infer co-expressed gene clusters through a mode […]


Want to access the full list of citations?
Lemon-Tree institution(s)
Institut Curie, Paris, France; INSERM U900, Paris, France; Mines ParisTech, Fontainebleau, France; Division of Genetics & Genomics, The Roslin Institute, The University of Edinburgh, Midlothian, UK
Lemon-Tree funding source(s)
Supported by Roslin Institute Strategic Grant funding from the BBSRC andthe European Community’s; Seventh Framework Programme (FP7/2007–2013) under grant agreement number FP7-HEALTH-2010-259348 (ASSET project).

Lemon-Tree reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Lemon-Tree