Lep-MAP pipeline

Lep-MAP specifications


Unique identifier OMICS_14862
Name Lep-MAP
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format LINKAGE
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Pasi Rastas <>

Publications for Lep-MAP

Lep-MAP citation

PMCID: 4558911

[…] or length. sas-genmod was used to test for sire and dam effects (and their interaction) on sex, using a probit link function and a binomial distribution [31]., the linkage map was constructed with lep-map [32]. snps with a minor allele frequency (maf) less than 0.05 and snps that deviated from the expected mendelian segregation (pā€‰<ā€‰0.001) were excluded. linkage groups were formed […]

Lep-MAP institution(s)
Department of Biosciences, Metapopulation Research Group, University of Helsinki, Finland; Institute of Biotechnology, University of Helsinki, Finland
Lep-MAP funding source(s)
Supported by the National Research Council of Finland (250444 and 256453) and the European Research Council (232826).

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