Assists users in analyzing next-generation sequencing (NGS) data. snakePipes provides DNA-mapping, ChIP-seq, ATAC-seq, RNA-seq, whole-genome bisulfite-seq (WGBS), HiC and single-cell RNA-seq workflows. It employs extensive quality-checks and produces reports that inform users about processing and analysis results. It provides workflows that allow processing and downstream analysis of data in an allele-specific manner.
Improves the sensitivity and efficiency of Single-Cell RNA-Barconding and Sequencing (SCRB-seq). mcSCRB-seq is a highly flexible, fast and efficient library protocol with low set-up costs and hence can be a valuable methodological addition for many laboratories.
Defines a S4 class for storing data from single-cell experiments. SingleCellExperiment is an R package that includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.
0 - 0 of 0