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LibSBGN specifications


Unique identifier OMICS_16370
Name LibSBGN
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Java
License Apache License version 2.0, GNU Lesser General Public License version 3.0, GNU Lesser General Public License version 2.1
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Martijn van Iersel <>

Publication for LibSBGN

LibSBGN in publications

PMCID: 4259112
PMID: 25538939
DOI: 10.3389/fbioe.2014.00061

[…] as can be done with sbml files. in contrast to the sbml layout extension, this format is focused on the concepts of sbgn only and can be validated against the sbgn specifications. the api library libsbgn facilitates the import and export of sbgn-ml files. the code of libsbgn has been automatically created from an xml schema definition file (xsd), which significantly reduces the implementation […]

PMCID: 3235518
PMID: 22180826
DOI: 10.4056/sigs.2034671

[…] given by anatoly sorokin from the university of edinburgh., the sbgn software support session was opened by alice vill├ęger, from the university of manchester (uk), who presented the status of libsbgn, a java api for manipulating sbgn [,]. tobias czauderna, from ipk gatersleben presented sbgn-ed, a plug-in for the software package vanted, (visualization and analysis of networks containing […]

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LibSBGN funding source(s)
This work was in part supported by the Biotechnology and Biological Sciences Research Council (BBSRC), the Netherlands Consortium for Systems Biology (NCSB), which is part of the Netherlands Genomics Initiative/Netherlands Organisation for Scientific Research, BioPreDyn which is a grant within the Seventh Framework Programme of the EU, the Intramural Research Program of the NIH, National Cancer Institute, Center for Cancer Research, and the German Ministry of Education and Research (BMBF).

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