LigandRNA statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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LigandRNA specifications

Information


Unique identifier OMICS_03784
Name LigandRNA
Interface Web user interface
Restrictions to use None
Input data A file containing RNA or DNA structure.
Input format PDB
Output data A ranking of ligand poses according to the scores and four variants of PDB files with the receptor structure.
Output format PDB
Computer skills Basic
Stability No
Maintained No

Publication for LigandRNA

LigandRNA in publication

PMCID: 5459475
PMID: 28582438
DOI: 10.1371/journal.pone.0178931

[…] for every ligand, setting the number of output conformation to 50thus, a total of 2000 potential bindings per compound were obtained. after re-scoring, the ligands were ranked according to the ligandrna score obtained. interestingly, the scores for our pyrido[2,3-d]pyrimidine dimers almost doubled those from our reference values (pentamidine and hoechst 33258, see )., as in previous […]


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LigandRNA institution(s)
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Warsaw, Poland; Laboratory of Structural Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland
LigandRNA funding source(s)
Supported by the Foundation for Polish Science (FNP; grant TEAM/2009-4/2) and the Polish National Science Centre (NCN; grant UMO-2011/03/N/NZ2/01428).

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